U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC107028893 eukaryotic translation initiation factor 2A [ Solanum pennellii ]

    Gene ID: 107028893, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107028893
    Gene description
    eukaryotic translation initiation factor 2A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum pennellii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current SPENNV200 (GCF_001406875.1) 8 NC_028644.1 (3834254..3845981, complement)

    Chromosome 8 - NC_028644.1Genomic Context describing neighboring genes Neighboring gene protein N-lysine methyltransferase METTL21A Neighboring gene cinnamate beta-D-glucosyltransferase-like Neighboring gene uncharacterized LOC107026971 Neighboring gene pentatricopeptide repeat-containing protein At5g43790

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_028644.1 Chromosome 8 Reference SPENNV200

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    eukaryotic translation initiation factor 2A
    Names
    COSII_At1g73180

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Solanum pennellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SPENNV200

    Genomic

    1. NC_028644.1 Reference SPENNV200

      Range
      3834254..3845981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015230134.2 → XP_015085620.1  eukaryotic translation initiation factor 2A

      Conserved Domains (4) summary
      COG2319
      Location:22 → 243
      WD40; WD40 repeat [General function prediction only]
      pfam08662
      Location:217 → 410
      eIF2A; Eukaryotic translation initiation factor eIF2A
      sd00039
      Location:279 → 315
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:39 → 392
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases