U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    CAT2 carnitine o-acetyltransferase [ Phaeodactylum tricornutum CCAP 1055/1 ]

    Gene ID: 7203430, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    CAT2
    Gene description
    carnitine o-acetyltransferase
    Locus tag
    PHATRDRAFT_48078
    Gene type
    protein coding
    RNA name
    carnitine o-acetyltransferase
    RefSeq status
    PROVISIONAL
    Organism
    Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CAT2 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Sequence:
    Chromosome: 16; NC_011684.1 (125619..127768)

    Chromosome 16 - NC_011684.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_011684.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Names
    carnitine o-acetyltransferase
    XP_002182478.1
    • Involved in beta oxidation. During import of acyl groups for beta-oxidation, or export of acetate, catalyzes this reaction in mitochondrial membranes: acyl-CoA + carnitine <==> acyl-carnitine + CoA; Acyl-carnitine transferase, mitochondrial precursor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_011684.1 Reference assembly

      Range
      125619..127768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002182442.1 → XP_002182478.1  carnitine o-acetyltransferase [Phaeodactylum tricornutum CCAP 1055/1]

      See identical proteins and their annotated locations for XP_002182478.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7G5X2
      Conserved Domains (1) summary
      pfam00755
      Location:72 → 655
      Carn_acyltransf; Choline/Carnitine o-acyltransferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials