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    CTB-49A3.2 uncharacterized CTB-49A3.2 [ Homo sapiens (human) ]

    Gene ID: 105379181, updated on 17-Sep-2024

    Summary

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    Gene symbol
    CTB-49A3.2
    Gene description
    uncharacterized CTB-49A3.2
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See CTB-49A3.2 in Genome Data Viewer
    Location:
    5q31.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (133207887..133226040)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (133727626..133745757)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132531489-132531990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132535193-132535692 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:132555882-132557081 Neighboring gene ribosomal protein L6 pseudogene 15 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132571312-132572176 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:132575776-132576276 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:132576277-132576777 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132579499-132580020 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:132581181-132582380 Neighboring gene uncharacterized LOC124901067 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132598157-132598658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23103 Neighboring gene follistatin like 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132649525-132650026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132650027-132650526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132654697-132655214 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132655215-132655731 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:132663701-132664408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132664409-132665116 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132667351-132667874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132667875-132668398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132676759-132677258 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:132677626-132677813 Neighboring gene uncharacterized LOC124901068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132699589-132700090 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:132700914-132701437 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:132706200-132707399

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      133207887..133226040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007058938.1 RNA Sequence

    2. XR_001742887.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      133727626..133745757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075953.1 RNA Sequence

    2. XR_007075952.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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