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    gfi1b Zinc finger protein Gfi-1b [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100195098, updated on 30-Nov-2023

    Summary

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    Gene symbol
    gfi1b
    Gene description
    Zinc finger protein Gfi-1b
    See related
    Ensembl:ENSSSAG00000066672
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See gfi1b in Genome Data Viewer
    Location:
    chromosome: ssa03
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa03 NC_059444.1 (68090620..68095481, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa03 NC_027302.1 (68546754..68564864, complement)

    Chromosome ssa03 - NC_059444.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase N2 Neighboring gene transforming growth factor beta receptor type 3 Neighboring gene volume-regulated anion channel subunit LRRC8D-like Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Zinc finger protein Gfi-1b; zinc finger protein Gfi-1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001140127.1 → NP_001133599.1  Zinc finger protein Gfi-1b

      See identical proteins and their annotated locations for NP_001133599.1

      Status: PROVISIONAL

      Source sequence(s)
      BT045285
      UniProtKB/TrEMBL
      B5X2L6
      Conserved Domains (2) summary
      sd00017
      Location:154 → 179
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:211 → 233
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059444.1 Reference Ssal_v3.1

      Range
      68090620..68095481 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014193405.2 → XP_014048880.1  zinc finger protein Gfi-1b isoform X1

      UniProtKB/TrEMBL
      A0A1S3R949
      Related
      ENSSSAP00000079202.2, ENSSSAT00000112803.2
      Conserved Domains (3) summary
      sd00017
      Location:213 → 233
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:211 → 233
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:253 → 278
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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