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    ptgr2 prostaglandin reductase 2 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100195778, updated on 18-Sep-2024

    Summary

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    Gene symbol
    ptgr2
    Gene description
    prostaglandin reductase 2
    See related
    Ensembl:ENSSSAG00000076564
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    Also known as
    zadh1
    Orthologs
    human zebrafish all
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    Genomic context

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    See ptgr2 in Genome Data Viewer
    Location:
    chromosome: ssa01
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa01 NC_059442.1 (42497732..42507331, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa01 NC_027300.1 (39545564..39555129, complement)

    Chromosome ssa01 - NC_059442.1Genomic Context describing neighboring genes Neighboring gene codanin 1 Neighboring gene tau-tubulin kinase 2 Neighboring gene transmembrane protein 62 Neighboring gene mitotic deacetylase associated SANT domain protein b Neighboring gene cysteine-rich protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 15-oxoprostaglandin 13-oxidase [NAD(P)+] activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in prostaglandin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prostaglandin reductase 2
    Names
    Zinc-binding alcohol dehydrogenase domain-containing protein 1
    NP_001134279.1
    XP_014049530.1
    XP_045572775.1
    XP_045572812.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001140807.1 → NP_001134279.1  prostaglandin reductase 2

      See identical proteins and their annotated locations for NP_001134279.1

      Status: PROVISIONAL

      Source sequence(s)
      BT047099
      UniProtKB/TrEMBL
      B5X7T0
      Related
      ENSSSAP00000106260.2, ENSSSAT00000140986.2
      Conserved Domains (2) summary
      cd08293
      Location:4 → 346
      PTGR2; Prostaglandin reductase
      COG2130
      Location:4 → 348
      CurA; NADPH-dependent curcumin reductase CurA [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059442.1 Reference Ssal_v3.1

      Range
      42497732..42507331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014194055.2 → XP_014049530.1  prostaglandin reductase 2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3RAZ8
      Related
      ENSSSAP00000106270.2, ENSSSAT00000140996.2
      Conserved Domains (2) summary
      cd08293
      Location:3 → 335
      PTGR2; Prostaglandin reductase
      COG2130
      Location:7 → 337
      CurA; NADPH-dependent curcumin reductase CurA [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]

    2. XM_045716819.1 → XP_045572775.1  prostaglandin reductase 2 isoform X2

      Related
      ENSSSAP00000106280.1, ENSSSAT00000141011.2

    3. XM_045716856.1 → XP_045572812.1  prostaglandin reductase 2 isoform X3

    RNA

    1. XR_006769593.1 RNA Sequence

      Related
      ENSSSAT00000173342.1
    Nucleotide Protein
    Heading Accession and Version

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