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    LINC02436 long intergenic non-protein coding RNA 2436 [ Homo sapiens (human) ]

    Gene ID: 101928877, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02436provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2436provided by HGNC
    Primary source
    HGNC:HGNC:53368
    See related
    Ensembl:ENSG00000250754 AllianceGenome:HGNC:53368
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.5) See more
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    Genomic context

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    Location:
    4q35.1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (185051877..185107248)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (188395282..188450934)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (185973031..186028402)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22245 Neighboring gene long intergenic non-protein coding RNA 2437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:185938894-185939474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:185939475-185940053 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:185940054-185940633 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:185941348-185942275 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:185942276-185943202 Neighboring gene helt bHLH transcription factor Neighboring gene uncharacterized LOC105377588 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:186030634-186031272 Neighboring gene Sharpr-MPRA regulatory region 4736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22246 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22247 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:186049861-186050404 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15847 Neighboring gene solute carrier family 25 member 4 Neighboring gene cilia and flagella associated protein 97 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:186125066-186125237 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22248 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22249 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15849 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15850 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15851 Neighboring gene sorting nexin 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_147059.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000509017.6

    2. NR_174102.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000655383.1

    3. NR_174103.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000662468.1

    4. NR_174104.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824

    5. NR_174105.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000669078.1

    6. NR_174106.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000663336.1

    7. NR_174107.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000653833.1

    8. NR_174108.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000652785.1

    9. NR_174109.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000665415.1

    10. NR_174110.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093824
      Related
      ENST00000667020.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      185051877..185107248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      188395282..188450934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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