PDLIM4 PDZ and LIM domain 4 [Gallus gallus (chicken)] - Gene

Summary

Symbol: PDLIM4provided by CGNC
Full Name: PDZ and LIM domain 4provided by CGNC
Primary source: CGNC:66207
See related: Ensembl:ENSGALG00010016266
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: RIL
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	13	NC_052544.1 (16391320..16423877)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	13	NC_052585.1 (16403080..16435641)

Chromosome 13 - NC_052544.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables muscle alpha-actinin binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in actin cytoskeleton organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in heart development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in muscle structure development	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in Z disc	IEA Inferred from Electronic Annotation more info	PubMed
located_in adherens junction	IEA Inferred from Electronic Annotation more info	PubMed
part_of filamentous actin	IEA Inferred from Electronic Annotation more info	PubMed
located_in stress fiber	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: PDZ and LIM domain protein 4

Names: LIM protein RIL; reversion-induced LIM protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_204839.3 → NP_990170.1 PDZ and LIM domain protein 4

See identical proteins and their annotated locations for NP_990170.1

Status: PROVISIONAL

Source sequence(s)

JAENSK010000256

UniProtKB/Swiss-Prot

Q9PW72

UniProtKB/TrEMBL

A0A8V0YVC8

Related

ENSGALP00010022578.1, ENSGALT00010039093.1

Conserved Domains (3) summary

cd09451
Location:255 → 307

LIM_RIL; The LIM domain of RIL

cd00992
Location:2 → 80

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

pfam15936
Location:139 → 225

DUF4749; Domain of unknown function (DUF4749)