U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    hce1 High choriolytic enzyme 1 [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100195775, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    hce1
    Gene description
    High choriolytic enzyme 1
    See related
    Ensembl:ENSSSAG00000079745
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See hce1 in Genome Data Viewer
    Location:
    chromosome: ssa11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa11 NC_059452.1 (9997887..10000676)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa11 NC_027310.1 (9976984..9979780)

    Chromosome ssa11 - NC_059452.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 6A-B Neighboring gene mitochondrial carrier homolog 2 Neighboring gene hatching enzyme 1.2-like Neighboring gene uncharacterized LOC106561970

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    high choriolytic enzyme 1
    NP_001134276.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001140804.1 → NP_001134276.1  high choriolytic enzyme 1 precursor

      See identical proteins and their annotated locations for NP_001134276.1

      Status: PROVISIONAL

      Source sequence(s)
      BT047095
      UniProtKB/TrEMBL
      B5X7S6, B5XCQ9, B5XFY0
      Related
      ENSSSAP00000115263.2, ENSSSAT00000150390.2
      Conserved Domains (2) summary
      cd04283
      Location:100 → 281
      ZnMc_hatching_enzyme; Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related ...
      pfam01400
      Location:105 → 282
      Astacin; Astacin (Peptidase family M12A)

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059452.1 Reference Ssal_v3.1

      Range
      9997887..10000676
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials