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    LOC112228555 polypeptide N-acetylgalactosaminyltransferase 10 [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112228555, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC112228555
    Gene description
    polypeptide N-acetylgalactosaminyltransferase 10
    See related
    Ensembl:ENSOTSG00005024118
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Also known as
    galnt10
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    Genomic context

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    See LOC112228555 in Genome Data Viewer
    Location:
    chromosome: LG30
    Exon count:
    13
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG30 NC_056458.1 (23146900..23229603, complement)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 30 NC_037126.1 (21561509..21644313)

    Linkage Group LG30 - NC_056458.1Genomic Context describing neighboring genes Neighboring gene flotillin-2a Neighboring gene uncharacterized LOC112228558 Neighboring gene dehydrogenase/reductase SDR family member 11 Neighboring gene protein FAM114A2 Neighboring gene CCR4-NOT transcription complex, subunit 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056458.1 Reference Otsh_v2.0 Primary Assembly

      Range
      23146900..23229603 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024393964.2 → XP_024249732.1  polypeptide N-acetylgalactosaminyltransferase 10 isoform X1

      UniProtKB/TrEMBL
      A0A8C8GJ07, A0A8C8IJY8
      Related
      ENSOTSP00005050040.1, ENSOTST00005054400.2
      Conserved Domains (2) summary
      cd02510
      Location:149 → 444
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:460 → 588
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_042309272.1 → XP_042165206.1  polypeptide N-acetylgalactosaminyltransferase 10 isoform X2

      UniProtKB/TrEMBL
      A0A8C8IJY8
      Conserved Domains (2) summary
      cd02510
      Location:32 → 327
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      smart00458
      Location:351 → 474
      RICIN; Ricin-type beta-trefoil
    Nucleotide Protein
    Heading Accession and Version

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