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    nop58 NOP58 ribonucleoprotein homolog (yeast) [ Haplochromis burtoni (Burton's mouthbrooder) ]

    Gene ID: 102301589, updated on 11-Apr-2024

    Summary

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    Gene symbol
    nop58
    Gene description
    NOP58 ribonucleoprotein homolog (yeast)
    See related
    Ensembl:ENSHBUG00000021827
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Haplochromis burtoni
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
    Orthologs
    human zebrafish all
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    Genomic context

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    See nop58 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582729.1 (587020..593489, complement)
    101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179776.1 (8757..15284)

    NW_024582729.1Genomic Context describing neighboring genes Neighboring gene islet cell autoantigen 1-like Neighboring gene WD repeat domain 12 Neighboring gene small nucleolar RNA SNORD11B Neighboring gene nuclear FMR1 interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box C/D methylation guide snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleolar protein 58

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NCSU_Asbu1 Primary Assembly

    Genomic

    1. NW_024582729.1 Reference NCSU_Asbu1 Primary Assembly

      Range
      587020..593489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005943367.3 → XP_005943429.1  nucleolar protein 58 isoform X2

      Conserved Domains (3) summary
      smart00931
      Location:163 → 214
      NOSIC; NOSIC (NUC001) domain
      pfam01798
      Location:169 → 397
      Nop; snoRNA binding domain, fibrillarin
      pfam08156
      Location:2 → 52
      NOP5NT; NOP5NT (NUC127) domain

    2. XM_005943366.3 → XP_005943428.1  nucleolar protein 58 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2X405
      Related
      ENSHBUP00000034354.1
      Conserved Domains (3) summary
      smart00931
      Location:163 → 214
      NOSIC; NOSIC (NUC001) domain
      pfam01798
      Location:169 → 397
      Nop; snoRNA binding domain, fibrillarin
      pfam08156
      Location:2 → 52
      NOP5NT; NOP5NT (NUC127) domain
    Nucleotide Protein
    Heading Accession and Version

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