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    TOR1B torsin family 1 member B [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100217655, updated on 13-Aug-2024

    Summary

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    Gene symbol
    TOR1B
    Gene description
    torsin family 1 member B
    See related
    Ensembl:ENSTGUG00000004451
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Orthologs
    human mouse all
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    Genomic context

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    See TOR1B in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 17 NC_044229.2 (6201307..6207431)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 17 NC_045015.1 (6164065..6170458)

    Chromosome 17 - NC_044229.2Genomic Context describing neighboring genes Neighboring gene paired related homeobox 2 Neighboring gene uncharacterized LOC115497563 Neighboring gene prostaglandin E synthase Neighboring gene torsin-1A Neighboring gene chromosome 17 C9orf78 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables kinesin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum lumen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    torsin-1B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044229.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      6201307..6207431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012578324.4 → XP_012433778.3  torsin-1B isoform X2

      UniProtKB/TrEMBL
      A0A674GJD6
      Conserved Domains (1) summary
      TIGR02639
      Location:64 → 307
      ClpA; ATP-dependent Clp protease ATP-binding subunit clpA

    2. XM_002195184.5 → XP_002195220.1  torsin-1B isoform X1

      UniProtKB/TrEMBL
      A0A674GDT5, H0Z1Z0
      Related
      ENSTGUP00000004580.2
      Conserved Domains (2) summary
      pfam06309
      Location:49 → 175
      Torsin
      TIGR02639
      Location:67 → 310
      ClpA; ATP-dependent Clp protease ATP-binding subunit clpA
    Nucleotide Protein
    Heading Accession and Version

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