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    tekt2.L tektin 2 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379154, updated on 4-Nov-2024

    Summary

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    Official Symbol
    tekt2.L
    Official Full Name
    tektin 2 L homeolog
    Primary source
    Xenbase:XB-GENE-17339178
    Locus tag
    XELAEV_18012444mg
    See related
    EnsemblRapid:ENSXLAG00005002405 AllianceGenome:Xenbase:XB-GENE-17339178
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tekt2-t; Tektin-t
    Summary
    Predicted to act upstream of or within cilium assembly and cilium movement involved in cell motility. Predicted to be located in several cellular components, including microtubule cytoskeleton; motile cilium; and nucleus. Is expressed in endoderm. Orthologous to human TEKT2 (tektin 2). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See tekt2.L in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (84547684..84565409, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (78977469..78994998, complement)

    Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene adenosine A1 receptor L homeolog Neighboring gene parathyroid hormone-related protein-like Neighboring gene uncharacterized LOC121399992 Neighboring gene argonaute 3, RISC catalytic component L homeolog Neighboring gene argonaute 1, RISC catalytic component L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC52862

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cilium movement involved in cell motility IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tektin 2 (testicular) L homeolog; tektin 2 L homeolog
    Names
    Tektin-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085998.1 → NP_001079467.1  tektin 2 L homeolog

      See identical proteins and their annotated locations for NP_001079467.1

      Status: PROVISIONAL

      Source sequence(s)
      BC043740
      UniProtKB/TrEMBL
      Q7ZTQ3
      Related
      ENSXLAP00005007201.1, ENSXLAT00005007310.1
      Conserved Domains (1) summary
      pfam03148
      Location:17 → 395
      Tektin; Tektin family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      84547684..84565409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041580831.1 → XP_041436765.1  tektin 2 (testicular) L homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J1M6T9
      Related
      ENSXLAP00005007210.1, ENSXLAT00005007319.1
      Conserved Domains (1) summary
      TIGR02168
      Location:135 → 340
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_018244749.2 → XP_018100238.1  tektin 2 (testicular) L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8HF91, A0A974DP25
    Nucleotide Protein Strain
    Heading Accession and Version

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