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    CHD9 chromodomain helicase DNA binding protein 9 [ Aquila chrysaetos chrysaetos ]

    Gene ID: 115345435, updated on 3-Aug-2024

    Summary

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    Gene symbol
    CHD9
    Gene description
    chromodomain helicase DNA binding protein 9
    See related
    Ensembl:ENSACCG00020003121
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aquila chrysaetos chrysaetos (sub-species: chrysaetos)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Aquila
    Orthologs
    human mouse all
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    Genomic context

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    See CHD9 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    101 current bAquChr1.4 (GCF_900496995.4) 9 NC_044012.1 (18125553..18226488)

    Chromosome 9 - NC_044012.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115345615 Neighboring gene TOX high mobility group box family member 3 Neighboring gene uncharacterized LOC115346403 Neighboring gene uncharacterized LOC115345294 Neighboring gene RB transcriptional corepressor like 2 Neighboring gene AKT interacting protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044012.1 Chromosome 9 Reference bAquChr1.4

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aquila chrysaetos chrysaetos Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bAquChr1.4

    Genomic

    1. NC_044012.1 Reference bAquChr1.4

      Range
      18125553..18226488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030024124.2 → XP_029879984.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

      Conserved Domains (7) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2546 → 2590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2471 → 2512
      BRK; BRK domain
      pfam10428
      Location:202 → 392
      SOG2; RAM signalling pathway protein

    2. XM_030024123.2 → XP_029879983.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

      Conserved Domains (7) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2554 → 2598
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2479 → 2520
      BRK; BRK domain
      pfam10428
      Location:202 → 392
      SOG2; RAM signalling pathway protein

    3. XM_030024120.2 → XP_029879980.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A663DXD8
      Conserved Domains (6) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2555 → 2599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2481 → 2521
      BRK; BRK domain

    4. XM_030024117.2 → XP_029879977.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A663DXD8
      Conserved Domains (6) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2555 → 2599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2481 → 2521
      BRK; BRK domain

    5. XM_030024122.2 → XP_029879982.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A663DXD8
      Related
      ENSACCP00020004545.1
      Conserved Domains (6) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2555 → 2599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2481 → 2521
      BRK; BRK domain

    6. XM_030024119.2 → XP_029879979.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A663DXD8
      Conserved Domains (6) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2555 → 2599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2481 → 2521
      BRK; BRK domain

    7. XM_030024121.2 → XP_029879981.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A663DXD8
      Conserved Domains (6) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2555 → 2599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2481 → 2521
      BRK; BRK domain

    8. XM_041126407.1 → XP_040982341.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A663DXD8
      Conserved Domains (6) summary
      PTZ00121
      Location:494 → 752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2555 → 2599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:856 → 1382
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767 → 825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683 → 747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:2481 → 2521
      BRK; BRK domain

    9. XM_030024125.2 → XP_029879985.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

      Conserved Domains (7) summary
      PTZ00121
      Location:25 → 283
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2086 → 2130
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:387 → 913
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:298 → 356
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:214 → 278
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:388 → 609
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:2011 → 2052
      BRK; BRK domain

    10. XM_030024127.2 → XP_029879987.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

      Conserved Domains (7) summary
      PTZ00121
      Location:4 → 250
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:2053 → 2097
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:354 → 880
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:265 → 323
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:181 → 245
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18061
      Location:355 → 576
      DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
      pfam07533
      Location:1978 → 2019
      BRK; BRK domain

    RNA

    1. XR_005933282.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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