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    SGCD sarcoglycan delta [ Puma yagouaroundi (jaguarundi) ]

    Gene ID: 121009757, updated on 22-Mar-2024

    Summary

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    Gene symbol
    SGCD
    Gene description
    sarcoglycan delta
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Puma yagouaroundi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Puma
    Orthologs
    human mouse all
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    Genomic context

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    See SGCD in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current PumYag (GCF_014898765.1) Unplaced Scaffold NW_024412377.1 (47460229..48404429)

    NW_024412377.1Genomic Context describing neighboring genes Neighboring gene methylosome subunit pICln-like Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC121009772 Neighboring gene U2 spliceosomal RNA Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene hepatitis A virus cellular receptor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024412377 Unplaced Scaffold Reference PumYag Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Puma yagouaroundi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PumYag Primary Assembly

    Genomic

    1. NW_024412377.1 Reference PumYag Primary Assembly

      Range
      47460229..48404429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040443049.1 → XP_040298983.1  delta-sarcoglycan isoform X1

      Conserved Domains (1) summary
      pfam04790
      Location:23 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    2. XM_040443057.1 → XP_040298991.1  delta-sarcoglycan isoform X1

      Conserved Domains (1) summary
      pfam04790
      Location:23 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    3. XM_040443063.1 → XP_040298997.1  delta-sarcoglycan isoform X2

      Conserved Domains (1) summary
      pfam04790
      Location:23 → 236
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    4. XM_040443038.1 → XP_040298972.1  delta-sarcoglycan isoform X1

      Conserved Domains (1) summary
      pfam04790
      Location:23 → 278
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    Nucleotide Protein
    Heading Accession and Version

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