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    LOC25495085 ferredoxin-thioredoxin reductase, variable chain [ Medicago truncatula (barrel medic) ]

    Gene ID: 25495085, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25495085
    Gene description
    ferredoxin-thioredoxin reductase, variable chain
    Locus tag
    MtrunA17_Chr6g0448971
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25495085 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 6 NC_053047.1 (122480..123245)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 6 NC_016412.2 (118205..119029)

    Chromosome 6 - NC_053047.1Genomic Context describing neighboring genes Neighboring gene sphingoid long-chain bases kinase 1 Neighboring gene uncharacterized LOC25495083 Neighboring gene protease Do-like 10, mitochondrial Neighboring gene putative B3 domain-containing protein At1g78640

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ferredoxin-thioredoxin reductase, variable chain
    Names
    putative ferredoxin:thioredoxin reductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053047.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      122480..123245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013595245.3 → XP_013450699.1  ferredoxin-thioredoxin reductase, variable chain

      UniProtKB/TrEMBL
      I3SXR8
      Conserved Domains (1) summary
      pfam02941
      Location:55 → 130
      FeThRed_A; Ferredoxin thioredoxin reductase variable alpha chain
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
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