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    LOC25496345 pentatricopeptide repeat-containing protein At3g60050 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25496345, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25496345
    Gene description
    pentatricopeptide repeat-containing protein At3g60050
    Locus tag
    MtrunA17_Chr6g0471201
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25496345 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 6 NC_053047.1 (21712179..21716773)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 6 NC_016412.2 (16187987..16192586, complement)

    Chromosome 6 - NC_053047.1Genomic Context describing neighboring genes Neighboring gene adenylate isopentenyltransferase 5, chloroplastic Neighboring gene uncharacterized LOC25496346 Neighboring gene heavy metal-associated isoprenylated plant protein 39 Neighboring gene small nucleolar RNA R71

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g60050
    Names
    PPR containing plant-like protein
    putative pentatricopeptide

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053047.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      21712179..21716773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013596652.3 → XP_013452106.2  pentatricopeptide repeat-containing protein At3g60050

      UniProtKB/TrEMBL
      A0A072UJW5
      Conserved Domains (2) summary
      sd00004
      Location:383 → 410
      PPR; PPR repeat [structural motif]
      cl25449
      Location:217 → 516
      PPR_2; PPR repeat family

    2. XM_013596653.3 → XP_013452107.1  pentatricopeptide repeat-containing protein At3g60050

      UniProtKB/TrEMBL
      A0A072UJW5
      Conserved Domains (2) summary
      sd00004
      Location:383 → 410
      PPR; PPR repeat [structural motif]
      cl25449
      Location:217 → 516
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Molecular Biology Databases