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    Ankrd40 ankyrin repeat domain 40 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690586, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Ankrd40provided by RGD
    Official Full Name
    ankyrin repeat domain 40provided by RGD
    Primary source
    RGD:1594678
    See related
    EnsemblRapid:ENSRNOG00000002935 AllianceGenome:RGD:1594678
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human ANKRD40 (ankyrin repeat domain 40). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 378.0), Heart (RPKM 285.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankrd40 in Genome Data Viewer
    Location:
    10q26
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (79778966..79792212)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (79282075..79295322)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (82032656..82045937)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ANKRD40 C-terminal like Neighboring gene LUC7-like 3 pre-mRNA splicing factor Neighboring gene uncharacterized LOC134480857 Neighboring gene ATP binding cassette subfamily C member 3 Neighboring gene calcium voltage-gated channel subunit alpha1 G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134699.1 → NP_001128171.1  ankyrin repeat domain-containing protein 40

      See identical proteins and their annotated locations for NP_001128171.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166790
      UniProtKB/TrEMBL
      A0A8I6AWD6, A0A9K3Y7U6, B2RYI5, E9PTM3
      Related
      ENSRNOP00000062992.2, ENSRNOT00000067751.4
      Conserved Domains (4) summary
      cd00204
      Location:14 → 93
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:48 → 93
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:14 → 64
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:14 → 40
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      79778966..79792212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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