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    LOC104419901 agamous-like MADS-box protein AGL65 [ Eucalyptus grandis ]

    Gene ID: 104419901, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC104419901
    Gene description
    agamous-like MADS-box protein AGL65
    Locus tag
    EUGRSUZ_B00522
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eucalyptus grandis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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    Genomic context

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    See LOC104419901 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current ASM1654582v1 (GCF_016545825.1) 2 NC_052613.1 (6706124..6712454)
    101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092439.1 (6861054..6867588)

    Chromosome 2 - NC_052613.1Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML45 Neighboring gene putative lipoate-protein ligase A Neighboring gene chlorophyll a-b binding protein 4, chloroplastic Neighboring gene expansin-A15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agamous-like MADS-box protein AGL65

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1654582v1 Primary Assembly

    Genomic

    1. NC_052613.1 Reference ASM1654582v1 Primary Assembly

      Range
      6706124..6712454
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039307287.1 → XP_039163221.1  agamous-like MADS-box protein AGL65

      UniProtKB/TrEMBL
      A0A059CYQ9
      Conserved Domains (1) summary
      smart00432
      Location:2 → 57
      MADS; MADS domain

    2. XM_010031733.3 → XP_010030035.2  agamous-like MADS-box protein AGL65

      UniProtKB/TrEMBL
      A0A059CYQ9
      Conserved Domains (1) summary
      smart00432
      Location:2 → 57
      MADS; MADS domain

    3. XM_039307286.1 → XP_039163220.1  agamous-like MADS-box protein AGL65

      UniProtKB/TrEMBL
      A0A059CYQ9
      Conserved Domains (1) summary
      smart00432
      Location:2 → 57
      MADS; MADS domain
    Nucleotide Protein
    Heading Accession and Version

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