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    SYNJ2 synaptojanin 2 [ Hyaena hyaena (striped hyena) ]

    Gene ID: 120245163, updated on 21-Mar-2024

    Summary

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    Gene symbol
    SYNJ2
    Gene description
    synaptojanin 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hyaena hyaena
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena
    Orthologs
    human mouse all
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    Genomic context

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    See SYNJ2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    100 current ASM300989v1 (GCF_003009895.1) Unplaced Scaffold NW_024081039.1 (505738..609369)

    NW_024081039.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha-1C chain-like Neighboring gene sorting nexin 9 Neighboring gene uncharacterized LOC120245158 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5 Neighboring gene U6 spliceosomal RNA Neighboring gene TUB like protein 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024081039 Unplaced Scaffold Reference ASM300989v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptic vesicle endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptojanin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hyaena hyaena Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM300989v1 Primary Assembly

    Genomic

    1. NW_024081039.1 Reference ASM300989v1 Primary Assembly

      Range
      505738..609369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039252082.1 → XP_039108013.1  synaptojanin-2 isoform X1

      Conserved Domains (3) summary
      COG5329
      Location:28 → 485
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:872 → 1008
      DUF1866; Domain of unknown function (DUF1866)
      cl00490
      Location:530 → 861
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

    2. XM_039252083.1 → XP_039108014.1  synaptojanin-2 isoform X2

      Conserved Domains (3) summary
      COG5329
      Location:28 → 485
      COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
      pfam08952
      Location:872 → 1008
      DUF1866; Domain of unknown function (DUF1866)
      cl00490
      Location:530 → 861
      EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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