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    LOC120195498 ubiquitin-NEDD8-like protein RUB2 [ Hibiscus syriacus ]

    Gene ID: 120195498, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120195498
    Gene description
    ubiquitin-NEDD8-like protein RUB2
    Locus tag
    F3Y22_tig00117016pilonHSYRG00717
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120195498 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063525.1 (7458110..7459737)

    NW_024063525.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120195624 Neighboring gene DNA (cytosine-5)-methyltransferase 4-like Neighboring gene uncharacterized LOC120195465 Neighboring gene beta-galactosidase 6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024063525 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-NEDD8-like protein RUB2
    Names
    Ubiquitin-NEDD8-like protein RUB1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063525.1 Reference ASM638163v2 Primary Assembly

      Range
      7458110..7459737
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039197508.1 → XP_039053439.1  ubiquitin-NEDD8-like protein RUB2

      UniProtKB/TrEMBL
      A0A6A2WPE4, A0A6A3AFB1
      Conserved Domains (2) summary
      cd01803
      Location:1 → 76
      Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
      cd01806
      Location:79 → 152
      Ubl_NEDD8; ubiquitin-like (Ubl) domain found in neural precursor cell expressed developmentally down-regulated protein 8 (NEDD8) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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