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    LOC120186215 transcription factor MYC2-like [ Hibiscus syriacus ]

    Gene ID: 120186215, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120186215
    Gene description
    transcription factor MYC2-like
    Locus tag
    F3Y22_tig00113337pilonHSYRG00070
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120186215 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024063456.1 (449538..451214, complement)

    NW_024063456.1Genomic Context describing neighboring genes Neighboring gene probable protein S-acyltransferase 12 Neighboring gene GRF1-interacting factor 3-like Neighboring gene uncharacterized LOC120186249 Neighboring gene uncharacterized LOC120186318

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024063456 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYC2-like
    Names
    BTB/POZ domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024063456.1 Reference ASM638163v2 Primary Assembly

      Range
      449538..451214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039190207.1 → XP_039046138.1  transcription factor MYC2-like

      Conserved Domains (2) summary
      cd11449
      Location:299 → 363
      bHLH_AtAIB_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein ABA-INDUCIBLE bHLH-TYPE (AIB) and similar proteins
      pfam14215
      Location:28 → 201
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    Nucleotide Protein
    Heading Accession and Version

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