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    LOC100279334 uncharacterized LOC100279334 [ Zea mays ]

    Gene ID: 100279334, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100279334
    Gene description
    uncharacterized LOC100279334
    Locus tag
    ZEAMMB73_Zm00001d038087
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    EREB171; GRMZM2G013657
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    Genomic context

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    See LOC100279334 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 6 NC_050101.1 (154430204..154436736)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 6 NC_024464.2 (147379213..147385745)

    Chromosome 6 - NC_050101.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L1, chloroplastic-like Neighboring gene uncharacterized LOC100276525 Neighboring gene SAD1 Neighboring gene transporter, folate-biopterin transporter

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp. Kilaru A, et al. BMC Plant Biol, 2015 Aug 16. PMID 26276496, Free PMC Article
    2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP2-like ethylene-responsive transcription factor SMOS1; uncharacterized protein LOC100279334
    Names
    AP2-EREBP transcription factor
    dwarf & irregular leaf1
    putative AP2/EREBP transcription factor superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001152355.1 → NP_001145827.1  AP2-like ethylene-responsive transcription factor SMOS1

      See identical proteins and their annotated locations for NP_001145827.1

      Status: PROVISIONAL

      Source sequence(s)
      BT054058
      UniProtKB/TrEMBL
      B4FT20, B8A329
      Conserved Domains (1) summary
      cl00033
      Location:75 → 146
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050101.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      154430204..154436736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020538902.1 → XP_020394491.1  uncharacterized protein LOC100279334 isoform X1

      UniProtKB/TrEMBL
      B4FT20, B8A329
      Conserved Domains (1) summary
      cl00033
      Location:75 → 146
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

    2. XM_008649492.2 → XP_008647714.2  uncharacterized protein LOC100279334 isoform X1

      UniProtKB/TrEMBL
      B4FT20, B8A329
      Conserved Domains (1) summary
      cl00033
      Location:75 → 146
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
    Nucleotide Protein
    Heading Accession and Version

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