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    STX17 syntaxin 17 [ Canis lupus familiaris (dog) ]

    Gene ID: 481630, updated on 17-Aug-2024

    Summary

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    Official Symbol
    STX17provided by VGNC
    Official Full Name
    syntaxin 17provided by VGNC
    Primary source
    VGNC:VGNC:46951
    See related
    Ensembl:ENSCAFG00845007978
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See STX17 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (57994856..58066658)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (55317343..55389186)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (57223368..57295171)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (56499047..56570883)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (56523978..56595735)

    Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102153773 Neighboring gene nuclear receptor subfamily 4 group A member 3 Neighboring gene endoplasmic reticulum protein 44 Neighboring gene inversin Neighboring gene testis expressed 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051815.1 Reference ROS_Cfam_1.0

      Range
      57994856..58066658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038682275.1 → XP_038538203.1  syntaxin-17 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
      Related
      ENSCAFP00845010879.1, ENSCAFT00845014037.1
      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    2. XM_038682276.1 → XP_038538204.1  syntaxin-17 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
      Related
      ENSCAFP00845010956.1, ENSCAFT00845014136.1
      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    3. XM_038682277.1 → XP_038538205.1  syntaxin-17 isoform X2

      UniProtKB/TrEMBL
      A0A8C0T7D7, A0A8I3N9N6
      Conserved Domains (2) summary
      COG5074
      Location:76 → 202
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:133 → 194
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    RNA

    1. XR_005434882.1 RNA Sequence

    2. XR_005434881.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049271.1 Alternate UMICH_Zoey_3.1

      Range
      56499047..56570883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038490816.1 → XP_038346744.1  syntaxin-17 isoform X1

      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    2. XM_038490817.1 → XP_038346745.1  syntaxin-17 isoform X1

      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    3. XM_038490818.1 → XP_038346746.1  syntaxin-17 isoform X2

      Conserved Domains (2) summary
      COG5074
      Location:76 → 202
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:133 → 194
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    RNA

    1. XR_005333434.1 RNA Sequence

    2. XR_005333433.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

      Range
      56523978..56595735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038616815.1 → XP_038472743.1  syntaxin-17 isoform X1

      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    2. XM_038616816.1 → XP_038472744.1  syntaxin-17 isoform X1

      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    3. XM_038616817.1 → XP_038472745.1  syntaxin-17 isoform X2

      Conserved Domains (2) summary
      COG5074
      Location:76 → 202
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:133 → 194
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    RNA

    1. XR_005401509.1 RNA Sequence

    2. XR_005401508.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

      Range
      57223368..57295171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038552937.1 → XP_038408865.1  syntaxin-17 isoform X1

      UniProtKB/TrEMBL
      A0A8C0Z2U0, A0A8I3N7E3

    2. XM_038552938.1 → XP_038408866.1  syntaxin-17 isoform X1

      UniProtKB/TrEMBL
      A0A8C0Z2U0, A0A8I3N7E3

    3. XM_038552939.1 → XP_038408867.1  syntaxin-17 isoform X2

      UniProtKB/TrEMBL
      A0A8C0T7D7, A0A8I3N9N6

    RNA

    1. XR_005367055.1 RNA Sequence

    2. XR_005367054.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      55317343..55389186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_538752.7 → XP_538752.2  syntaxin-17 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    2. XM_038667540.1 → XP_038523468.1  syntaxin-17 isoform X1

      UniProtKB/TrEMBL
      A0A8C0L5X2, A0A8C0TCP4, A0A8C0Z2U0, A0A8I3N7E3
      Conserved Domains (2) summary
      COG5074
      Location:105 → 231
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:162 → 223
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    3. XM_038667541.1 → XP_038523469.1  syntaxin-17 isoform X2

      UniProtKB/TrEMBL
      A0A8C0T7D7, A0A8I3N9N6
      Conserved Domains (2) summary
      COG5074
      Location:76 → 202
      COG5074; t-SNARE complex subunit, syntaxin [Intracellular trafficking, secretion, and vesicular transport]
      cd15846
      Location:133 → 194
      SNARE_syntaxin17; SNARE motif of syntaxin 17

    RNA

    1. XR_005427910.1 RNA Sequence

    2. XR_002631625.2 RNA Sequence

    Nucleotide Protein
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