U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    EIF3E eukaryotic translation initiation factor 3 subunit E [ Canis lupus familiaris (dog) ]

    Gene ID: 475070, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EIF3Eprovided by VGNC
    Official Full Name
    eukaryotic translation initiation factor 3 subunit Eprovided by VGNC
    Primary source
    VGNC:VGNC:40271
    See related
    Ensembl:ENSCAFG00845011027
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    EIF3S6
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EIF3E in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (9108531..9161638, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (8807247..8860343, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (9056970..9110052, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (8851894..8904969, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (8975736..9028816, complement)

    Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene R-spondin 2 Neighboring gene uncharacterized LOC102154405 Neighboring gene uncharacterized LOC111098520 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of eukaryotic translation initiation factor 3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    eukaryotic translation initiation factor 3 subunit E
    Names
    eukaryotic translation initiation factor 3, subunit 6 48kDa

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051817.1 Reference ROS_Cfam_1.0

      Range
      9108531..9161638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038684851.1 → XP_038540779.1  eukaryotic translation initiation factor 3 subunit E

      UniProtKB/TrEMBL
      A0A8C0JQ68, A0A8C0QGD6, A0A8I3NHG8, A0A8P0N3W2
      Related
      ENSCAFP00845015327.1, ENSCAFT00845019594.1
      Conserved Domains (1) summary
      cd21378
      Location:3 → 424
      eIF3E; eukaryotic translation initiation factor 3 subunit E

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049273.1 Alternate UMICH_Zoey_3.1

      Range
      8851894..8904969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038493076.1 → XP_038349004.1  eukaryotic translation initiation factor 3 subunit E

      Conserved Domains (1) summary
      cd21378
      Location:3 → 424
      eIF3E; eukaryotic translation initiation factor 3 subunit E

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

      Range
      8975736..9028816 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038619235.1 → XP_038475163.1  eukaryotic translation initiation factor 3 subunit E

      Conserved Domains (1) summary
      cd21378
      Location:3 → 424
      eIF3E; eukaryotic translation initiation factor 3 subunit E

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

      Range
      9056970..9110052 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038555335.1 → XP_038411263.1  eukaryotic translation initiation factor 3 subunit E

      UniProtKB/TrEMBL
      A0A8C0JQ68, A0A8C0QGD6, A0A8I3NHG8, A0A8P0N3W2
      Conserved Domains (1) summary
      cd21378
      Location:3 → 424
      eIF3E; eukaryotic translation initiation factor 3 subunit E

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      8807247..8860343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_532304.6 → XP_532304.2  eukaryotic translation initiation factor 3 subunit E

      See identical proteins and their annotated locations for XP_532304.2

      UniProtKB/TrEMBL
      A0A8C0JQ68, A0A8C0QGD6, A0A8I3NHG8, A0A8P0N3W2
      Conserved Domains (1) summary
      cd21378
      Location:3 → 424
      eIF3E; eukaryotic translation initiation factor 3 subunit E
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.