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    LOC100194377 uncharacterized LOC100194377 [ Zea mays ]

    Gene ID: 100194377, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100194377
    Gene description
    uncharacterized LOC100194377
    Locus tag
    ZEAMMB73_Zm00001d042363
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G087032
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    Genomic context

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    See LOC100194377 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 3 NC_050098.1 (163836594..163842482)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 3 NC_024461.2 (163299576..163305482)

    Chromosome 3 - NC_050098.1Genomic Context describing neighboring genes Neighboring gene Wiscott-Aldrich syndrome, C-terminal Neighboring gene leucine-rich repeat receptor protein kinase MSP1 Neighboring gene uncharacterized LOC100277337 Neighboring gene uncharacterized LOC103650853

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Zinc finger CCCH domain-containing protein 12; uncharacterized protein LOC100194377
    Names
    Zinc finger CCCH domain-containing protein 33

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001139411.1 → NP_001132883.1  Zinc finger CCCH domain-containing protein 12

      See identical proteins and their annotated locations for NP_001132883.1

      Status: PROVISIONAL

      Source sequence(s)
      BT036907
      UniProtKB/TrEMBL
      A0A1D6N382, B4FIG9
      Conserved Domains (1) summary
      pfam00642
      Location:363 → 388
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050098.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      163836594..163842482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035965672.1 → XP_035821565.1  uncharacterized protein LOC100194377 isoform X2

      UniProtKB/TrEMBL
      A0A1D6N382, A0A804N8P9
      Conserved Domains (1) summary
      pfam00642
      Location:363 → 388
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    2. XM_008674006.3 → XP_008672228.1  uncharacterized protein LOC100194377 isoform X1

      UniProtKB/TrEMBL
      A0A1D6N382, A0A804N8Q0
      Conserved Domains (2) summary
      COG5084
      Location:65 → 244
      YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
      pfam00642
      Location:344 → 368
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein
    Heading Accession and Version

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