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    LOC105642616 ribosomal RNA small subunit methyltransferase [ Jatropha curcas ]

    Gene ID: 105642616, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC105642616
    Gene description
    ribosomal RNA small subunit methyltransferase
    Locus tag
    JCGZ_14023
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Jatropha curcas
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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    Genomic context

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    See LOC105642616 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023591416.1 (1719933..1721682, complement)
    101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124637.1 (929363..931112, complement)

    NW_023591416.1Genomic Context describing neighboring genes Neighboring gene histidine kinase CKI1 Neighboring gene uncharacterized LOC119370978 Neighboring gene bromodomain and WD repeat-containing protein 1 Neighboring gene DNA replication licensing factor MCM7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (adenine-N6,N6-)-dimethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA small subunit methyltransferase
    Names
    probable dimethyladenosine transferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RJC1_Hi-C Primary Assembly

    Genomic

    1. NW_023591416.1 Reference RJC1_Hi-C Primary Assembly

      Range
      1719933..1721682 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012227494.3 → XP_012082884.1  ribosomal RNA small subunit methyltransferase

      See identical proteins and their annotated locations for XP_012082884.1

      UniProtKB/TrEMBL
      A0A067JWM2
      Conserved Domains (1) summary
      PTZ00338
      Location:22 → 351
      PTZ00338; dimethyladenosine transferase-like protein; Provisional
    Nucleotide Protein
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