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    LOC119006805 plectin-like [ Acanthopagrus latus (yellowfin seabream) ]

    Gene ID: 119006805, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC119006805
    Gene description
    plectin-like
    See related
    EnsemblRapid:ENSALTG00010002616
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthopagrus latus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
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    Genomic context

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    See LOC119006805 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    100 current fAcaLat1.1 (GCF_904848185.1) 17 NC_051055.1 (8280126..8415929)

    Chromosome 17 - NC_051055.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene uncharacterized LOC119005692 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_051055.1 Chromosome 17 Reference fAcaLat1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ankyrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables keratin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of muscle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hemidesmosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intermediate filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wound healing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in hemidesmosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plectin-like

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAcaLat1.1 Primary Assembly

    Genomic

    1. NC_051055.1 Reference fAcaLat1.1 Primary Assembly

      Range
      8280126..8415929
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037075902.1 → XP_036931797.1  plectin-like isoform X8

      Conserved Domains (10) summary
      PTZ00121
      Location:1824 → 2655
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4037 → 4068
      PLEC; Plectin repeat
      COG0419
      Location:1077 → 1613
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd00176
      Location:661 → 850
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1365 → 2155
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4075 → 4114
      Plectin; Plectin repeat
      pfam17902
      Location:836 → 902
      SH3_10; SH3 domain
      pfam18373
      Location:937 → 1014
      Spectrin_like; Spectrin like domain
      cd21188
      Location:67 → 189
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:202 → 307
      CH_SF; calponin homology (CH) domain superfamily

    2. XM_037075903.1 → XP_036931798.1  plectin-like isoform X9

      Conserved Domains (10) summary
      PTZ00121
      Location:1818 → 2649
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4031 → 4062
      PLEC; Plectin repeat
      COG0419
      Location:1071 → 1607
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd00176
      Location:655 → 844
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1359 → 2149
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4069 → 4108
      Plectin; Plectin repeat
      pfam17902
      Location:830 → 896
      SH3_10; SH3 domain
      pfam18373
      Location:931 → 1008
      Spectrin_like; Spectrin like domain
      cd21188
      Location:67 → 183
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:196 → 301
      CH_SF; calponin homology (CH) domain superfamily

    3. XM_037075905.1 → XP_036931800.1  plectin-like isoform X10

      Related
      ENSALTP00010005084.1, ENSALTT00010006412.1
      Conserved Domains (10) summary
      PTZ00121
      Location:1798 → 2629
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4011 → 4042
      PLEC; Plectin repeat
      COG0419
      Location:1051 → 1587
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd00176
      Location:643 → 832
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1339 → 2129
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4049 → 4088
      Plectin; Plectin repeat
      pfam17902
      Location:818 → 884
      SH3_10; SH3 domain
      pfam18373
      Location:919 → 996
      Spectrin_like; Spectrin like domain
      cd21188
      Location:67 → 171
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:184 → 289
      CH_SF; calponin homology (CH) domain superfamily

    4. XM_037075895.1 → XP_036931790.1  plectin-like isoform X1

      Conserved Domains (12) summary
      PTZ00121
      Location:3163 → 3994
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:5376 → 5407
      PLEC; Plectin repeat
      COG0419
      Location:2416 → 2952
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      PRK13914
      Location:360 → 708
      PRK13914; invasion associated endopeptidase
      cd00176
      Location:2000 → 2189
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:2704 → 3494
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:5414 → 5453
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:2175 → 2241
      SH3_10; SH3 domain
      pfam18373
      Location:2276 → 2353
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1402 → 1524
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:1541 → 1646
      CH_SF; calponin homology (CH) domain superfamily

    5. XM_037075896.1 → XP_036931791.1  plectin-like isoform X2

      Conserved Domains (12) summary
      PTZ00121
      Location:3155 → 3986
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:5368 → 5399
      PLEC; Plectin repeat
      COG0419
      Location:2408 → 2944
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      PRK13914
      Location:360 → 708
      PRK13914; invasion associated endopeptidase
      cd00176
      Location:2000 → 2189
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:2696 → 3486
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:5406 → 5445
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:2175 → 2241
      SH3_10; SH3 domain
      pfam18373
      Location:2276 → 2353
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1402 → 1524
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:1541 → 1646
      CH_SF; calponin homology (CH) domain superfamily

    6. XM_037075898.1 → XP_036931793.1  plectin-like isoform X4

      Conserved Domains (12) summary
      PTZ00121
      Location:3151 → 3982
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:5364 → 5395
      PLEC; Plectin repeat
      COG0419
      Location:2404 → 2940
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      PRK13914
      Location:360 → 708
      PRK13914; invasion associated endopeptidase
      cd00176
      Location:1988 → 2177
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:2692 → 3482
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:5402 → 5441
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:2163 → 2229
      SH3_10; SH3 domain
      pfam18373
      Location:2264 → 2341
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1402 → 1512
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:1529 → 1634
      CH_SF; calponin homology (CH) domain superfamily

    7. XM_037075897.1 → XP_036931792.1  plectin-like isoform X3

      Conserved Domains (12) summary
      PTZ00121
      Location:3153 → 3984
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:5366 → 5397
      PLEC; Plectin repeat
      COG0419
      Location:2406 → 2942
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      PRK13914
      Location:360 → 708
      PRK13914; invasion associated endopeptidase
      cd00176
      Location:1990 → 2179
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:2694 → 3484
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:5404 → 5443
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:2165 → 2231
      SH3_10; SH3 domain
      pfam18373
      Location:2266 → 2343
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1402 → 1518
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:1531 → 1636
      CH_SF; calponin homology (CH) domain superfamily

    8. XM_037075899.1 → XP_036931794.1  plectin-like isoform X5

      Conserved Domains (12) summary
      PTZ00121
      Location:3145 → 3976
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:5358 → 5389
      PLEC; Plectin repeat
      COG0419
      Location:2398 → 2934
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      PRK13914
      Location:360 → 708
      PRK13914; invasion associated endopeptidase
      cd00176
      Location:1982 → 2171
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:2686 → 3476
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:5396 → 5435
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:2157 → 2223
      SH3_10; SH3 domain
      pfam18373
      Location:2258 → 2335
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1402 → 1506
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:1523 → 1628
      CH_SF; calponin homology (CH) domain superfamily

    9. XM_037075900.1 → XP_036931795.1  plectin-like isoform X6

      Conserved Domains (12) summary
      PTZ00121
      Location:3137 → 3968
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:5350 → 5381
      PLEC; Plectin repeat
      COG0419
      Location:2390 → 2926
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      PRK13914
      Location:360 → 708
      PRK13914; invasion associated endopeptidase
      cd00176
      Location:1982 → 2171
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:2678 → 3468
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:5388 → 5427
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:2157 → 2223
      SH3_10; SH3 domain
      pfam18373
      Location:2258 → 2335
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1402 → 1506
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:1523 → 1628
      CH_SF; calponin homology (CH) domain superfamily

    10. XM_037075901.1 → XP_036931796.1  plectin-like isoform X7

      Related
      ENSALTP00010005079.1, ENSALTT00010006407.1
      Conserved Domains (12) summary
      PTZ00121
      Location:3133 → 3964
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:5346 → 5377
      PLEC; Plectin repeat
      COG0419
      Location:2386 → 2922
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      PRK13914
      Location:360 → 708
      PRK13914; invasion associated endopeptidase
      cd00176
      Location:1978 → 2167
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:2674 → 3464
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:5384 → 5423
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 99
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:2153 → 2219
      SH3_10; SH3 domain
      pfam18373
      Location:2254 → 2331
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1402 → 1506
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:1519 → 1624
      CH_SF; calponin homology (CH) domain superfamily

    11. XM_037075906.1 → XP_036931801.1  plectin-like isoform X11

      Conserved Domains (10) summary
      PTZ00121
      Location:1786 → 2617
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:3999 → 4030
      PLEC; Plectin repeat
      COG0419
      Location:1039 → 1575
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd00176
      Location:631 → 820
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1327 → 2117
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4037 → 4076
      Plectin; Plectin repeat
      pfam17902
      Location:806 → 872
      SH3_10; SH3 domain
      pfam18373
      Location:907 → 984
      Spectrin_like; Spectrin like domain
      cd21188
      Location:43 → 159
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:172 → 277
      CH_SF; calponin homology (CH) domain superfamily

    12. XM_037075907.1 → XP_036931802.1  plectin-like isoform X12

      Conserved Domains (10) summary
      PTZ00121
      Location:1782 → 2613
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:3995 → 4026
      PLEC; Plectin repeat
      COG0419
      Location:1035 → 1571
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd00176
      Location:619 → 808
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1323 → 2113
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4033 → 4072
      Plectin; Plectin repeat
      pfam17902
      Location:794 → 860
      SH3_10; SH3 domain
      pfam18373
      Location:895 → 972
      Spectrin_like; Spectrin like domain
      cd21188
      Location:43 → 147
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:160 → 265
      CH_SF; calponin homology (CH) domain superfamily

    13. XM_037075908.1 → XP_036931803.1  plectin-like isoform X13

      Related
      ENSALTP00010005077.1, ENSALTT00010006405.1
      Conserved Domains (10) summary
      PTZ00121
      Location:1774 → 2605
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:3987 → 4018
      PLEC; Plectin repeat
      COG0419
      Location:1027 → 1563
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd00176
      Location:619 → 808
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      TIGR02168
      Location:1315 → 2105
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00681
      Location:4025 → 4064
      Plectin; Plectin repeat
      pfam17902
      Location:794 → 860
      SH3_10; SH3 domain
      pfam18373
      Location:895 → 972
      Spectrin_like; Spectrin like domain
      cd21188
      Location:43 → 147
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:160 → 265
      CH_SF; calponin homology (CH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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