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    LOC112150402 torsin-1A-interacting protein 2 [ Oryzias melastigma (Indian medaka) ]

    Gene ID: 112150402, updated on 10-Jul-2024

    Summary

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    Gene symbol
    LOC112150402
    Gene description
    torsin-1A-interacting protein 2
    See related
    EnsemblRapid:ENSOMEG00005006378
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias melastigma
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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    Genomic context

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    See LOC112150402 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    8
    Annotation release Status Assembly LG Location
    101 current ASM292280v2 (GCF_002922805.2) LG4 NC_050515.1 (1697817..1704813, complement)
    100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096086.1 (19250255..19257468)

    Linkage Group LG4 - NC_050515.1Genomic Context describing neighboring genes Neighboring gene chemokine (C motif) receptor 1a, duplicate 1 Neighboring gene putative ferric-chelate reductase 1 homolog Neighboring gene torsin-1A-interacting protein 2 Neighboring gene olfactomedin-like 2Ba

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    torsin-1A-interacting protein 1; torsin-1A-interacting protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM292280v2 Primary Assembly

    Genomic

    1. NC_050515.1 Reference ASM292280v2 Primary Assembly

      Range
      1697817..1704813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024278716.2 → XP_024134484.1  torsin-1A-interacting protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A834CB12
      Conserved Domains (1) summary
      pfam05609
      Location:305 → 507
      LAP1C; Lamina-associated polypeptide 1C (LAP1C)

    2. XM_024278715.2 → XP_024134483.1  torsin-1A-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A834CB12
      Conserved Domains (1) summary
      pfam05609
      Location:88 → 511
      LAP1C; Lamina-associated polypeptide 1C (LAP1C)

    3. XM_024278714.2 → XP_024134482.1  torsin-1A-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3B3BLT8, A0A834CB12
      Related
      ENSOMEP00005013165.1, ENSOMET00005014792.1
      Conserved Domains (1) summary
      pfam05609
      Location:310 → 512
      LAP1C; Lamina-associated polypeptide 1C (LAP1C)
    Nucleotide Protein Strain
    Heading Accession and Version

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