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    MIRLET7A1HG miRlet-7a-1/let-7f-1/let-7d cluster host gene [ Homo sapiens (human) ]

    Gene ID: 112903833, updated on 15-Oct-2023

    Summary

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    Official Symbol
    MIRLET7A1HGprovided by HGNC
    Official Full Name
    miRlet-7a-1/let-7f-1/let-7d cluster host geneprovided by HGNC
    Primary source
    HGNC:HGNC:53970
    See related
    Ensembl:ENSG00000269929 AllianceGenome:HGNC:53970
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See MIRLET7A1HG in Genome Data Viewer
    Location:
    9q22.32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (94166258..94200905)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (106334316..106368968)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (96928540..96963187)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase domain containing 1 Neighboring gene CYCS pseudogene 24 Neighboring gene Sharpr-MPRA regulatory region 768 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96856496-96857248 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:96880956-96881652 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110048 Neighboring gene tripartite motif-containing protein 54-like Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110072 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110085 Neighboring gene PTPDC1-MIRLET7DHG intergenic CAGE-defined high expression enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20053 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20054 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28628 Neighboring gene microRNA let-7a-1 Neighboring gene microRNA let-7f-1 Neighboring gene long intergenic non-protein coding RNA 2603 Neighboring gene microRNA let-7d Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:96974681-96975243 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC124902332

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SNORD11B-mediated 2'-O-methylation of primary let-7a in colorectal carcinogenesis.
      Title: SNORD11B-mediated 2'-O-methylation of primary let-7a in colorectal carcinogenesis.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_170274.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL158152

    2. NR_170275.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL158152

    3. NR_170276.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL158152
      Related
      ENST00000710611.1

    4. NR_170277.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL158152

    5. NR_170278.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL158152
      Related
      ENST00000652620.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      94166258..94200905
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      106334316..106368968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases