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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029795.1 RefSeqGene
- Range
-
6760..105197
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001163147.2 → NP_001156619.1 ETS translocation variant 1 isoform b
See identical proteins and their annotated locations for NP_001156619.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR and an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting isoform (b) lacks an internal segment, compared to isoform a. This isoform contains the N-terminal TAD.
- Source sequence(s)
-
AB209202, AC004857, BC098403, BU737178, DA114165
- Consensus CDS
-
CCDS55087.1
- UniProtKB/TrEMBL
-
B7Z2C9
- Related
- ENSP00000385381.2, ENST00000405192.6
- Conserved Domains (2) summary
-
- smart00413
Location:311 → 395
- ETS; erythroblast transformation specific domain
- pfam04621
Location:1 → 310
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_001163148.2 → NP_001156620.1 ETS translocation variant 1 isoform c
See identical proteins and their annotated locations for NP_001156620.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents use of an alternate promoter and 5' UTR, and lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. The resulting isoform (c) lacks an internal segment near the N-terminus, compared to isoform a. Both variants 3 and 4 encode the same isoform. This isoform contains a truncated TAD.
- Source sequence(s)
-
AC004857, AK294755, BU737178, DB093597, DB099964
- Consensus CDS
-
CCDS55086.1
- UniProtKB/TrEMBL
-
B7Z2C9
- Conserved Domains (2) summary
-
- smart00413
Location:316 → 400
- ETS; erythroblast transformation specific domain
- pfam04621
Location:2 → 315
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_001163149.2 → NP_001156621.1 ETS translocation variant 1 isoform c
See identical proteins and their annotated locations for NP_001156621.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) represents use of an alternate promoter and 5' UTR, and lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. The resulting isoform (c) lacks an internal segment near the N-terminus, compared to isoform a. Both variants 3 and 4 encode the same isoform. This isoform contains a truncated TAD.
- Source sequence(s)
-
AC004857, AC004909, BC098403, BU737178, X87175
- Consensus CDS
-
CCDS55086.1
- UniProtKB/TrEMBL
-
B7Z2C9
- Related
- ENSP00000385686.1, ENST00000403685.5
- Conserved Domains (2) summary
-
- smart00413
Location:316 → 400
- ETS; erythroblast transformation specific domain
- pfam04621
Location:2 → 315
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_001163150.2 → NP_001156622.1 ETS translocation variant 1 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) represents use of an alternate promoter, 5' UTR, and 5' coding region, compared to variant 1. The resulting isoform (d) has a shorter and distinct N-terminus, compared to isoform a. This isoform lacks major part of the N-terminal TAD.
- Source sequence(s)
-
AC004857, AK294572, BC098403, BU737178, DC308837
- Consensus CDS
-
CCDS55085.1
- UniProtKB/TrEMBL
-
B7Z2C9
- Related
- ENSP00000384138.1, ENST00000403527.6
- Conserved Domains (2) summary
-
- smart00413
Location:294 → 378
- ETS; erythroblast transformation specific domain
- pfam04621
Location:21 → 293
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_001163151.2 → NP_001156623.1 ETS translocation variant 1 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) represents use of an alternate promoter, 5' UTR, 5' coding region, and lacks an alternate in-frame exon, compared to variant 1. The resulting isoform (e) has a shorter and distinct N-terminus, compared to isoform a. This isoform lacks the N-terminal TAD.
- Source sequence(s)
-
AC004857, AK299693, BU737178
- Consensus CDS
-
CCDS55083.1
- UniProtKB/TrEMBL
-
B7Z2C9
- Related
- ENSP00000393078.2, ENST00000438956.6
- Conserved Domains (2) summary
-
- smart00413
Location:276 → 360
- ETS; erythroblast transformation specific domain
- pfam04621
Location:21 → 275
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_001163152.2 → NP_001156624.1 ETS translocation variant 1 isoform f
See identical proteins and their annotated locations for NP_001156624.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) represents use of an alternate promoter, 5' UTR, 5' coding region, and lacks an alternate in-frame exon, compared to variant 1. The resulting isoform (f) has a shorter and distinct N-terminus and lacks an internal segment, compared to isoform a. This isoform lacks major part of the N-terminal TAD.
- Source sequence(s)
-
AC004857, AK299693, AK316007, BU737178
- Consensus CDS
-
CCDS55084.1
- UniProtKB/TrEMBL
-
B7Z2C9
- Related
- ENSP00000394710.2, ENST00000443608.6
- Conserved Domains (2) summary
-
- smart00413
Location:231 → 315
- ETS; erythroblast transformation specific domain
- pfam04621
Location:21 → 230
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_001370555.1 → NP_001357484.1 ETS translocation variant 1 isoform a
Status: REVIEWED
- Source sequence(s)
-
AC004857, AC004909
- Consensus CDS
-
CCDS55088.1
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
- UniProtKB/TrEMBL
-
B7Z2C9
- Conserved Domains (2) summary
-
- smart00413
Location:334 → 418
- ETS; erythroblast transformation specific domain
- pfam04621
Location:2 → 333
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_001370556.1 → NP_001357485.1 ETS translocation variant 1 isoform g
Status: REVIEWED
- Source sequence(s)
-
AC004857
- UniProtKB/TrEMBL
-
B7Z2C9
- Conserved Domains (2) summary
-
- smart00413
Location:318 → 402
- ETS; erythroblast transformation specific domain
- pfam04621
Location:2 → 317
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
NM_004956.5 → NP_004947.2 ETS translocation variant 1 isoform a
See identical proteins and their annotated locations for NP_004947.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). This isoform contains the N-terminal TAD.
- Source sequence(s)
-
AC004857, BC098403, BU737178
- Consensus CDS
-
CCDS55088.1
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
- UniProtKB/TrEMBL
-
B7Z2C9
- Related
- ENSP00000405327.1, ENST00000430479.6
- Conserved Domains (2) summary
-
- smart00413
Location:334 → 418
- ETS; erythroblast transformation specific domain
- pfam04621
Location:2 → 333
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
RNA
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NR_120445.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) contains an alternate 5' exon and includes an additional internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC004857, BC045776, BU737178, DB099964
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000007.14 Reference GRCh38.p14 Primary Assembly
- Range
-
13891229..13991425 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011515168.4 → XP_011513470.1 ETS translocation variant 1 isoform X2
See identical proteins and their annotated locations for XP_011513470.1
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
- UniProtKB/TrEMBL
-
B7Z2C9
- Conserved Domains (2) summary
-
- smart00413
Location:334 → 418
- ETS; erythroblast transformation specific domain
- pfam04621
Location:2 → 333
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
XM_047419985.1 → XP_047275941.1 ETS translocation variant 1 isoform X2
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
-
XM_047419987.1 → XP_047275943.1 ETS translocation variant 1 isoform X5
- Related
- ENSP00000242066.5, ENST00000242066.10
-
XM_047419986.1 → XP_047275942.1 ETS translocation variant 1 isoform X2
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
- Related
- ENSP00000385551.2, ENST00000405218.6
-
XM_047419988.1 → XP_047275944.1 ETS translocation variant 1 isoform X5
-
XM_011515170.4 → XP_011513472.1 ETS translocation variant 1 isoform X4
- UniProtKB/TrEMBL
-
B7Z2C9
- Conserved Domains (2) summary
-
- smart00413
Location:329 → 413
- ETS; erythroblast transformation specific domain
- pfam04621
Location:11 → 328
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
XM_024446676.2 → XP_024302444.1 ETS translocation variant 1 isoform X3
- UniProtKB/TrEMBL
-
B7Z2C9
- Conserved Domains (2) summary
-
- smart00413
Location:330 → 414
- ETS; erythroblast transformation specific domain
- pfam04621
Location:29 → 329
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
-
XM_011515167.4 → XP_011513469.1 ETS translocation variant 1 isoform X1
- UniProtKB/TrEMBL
- B5MCT2, B7Z2C9
- Related
- ENSP00000384085.4, ENST00000405358.8
- Conserved Domains (2) summary
-
- smart00413
Location:348 → 432
- ETS; erythroblast transformation specific domain
- pfam04621
Location:29 → 347
- ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060931.1 Alternate T2T-CHM13v2.0
- Range
-
14023217..14123457 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054357473.1 → XP_054213448.1 ETS translocation variant 1 isoform X2
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
-
XM_054357474.1 → XP_054213449.1 ETS translocation variant 1 isoform X2
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
-
XM_054357478.1 → XP_054213453.1 ETS translocation variant 1 isoform X5
-
XM_054357475.1 → XP_054213450.1 ETS translocation variant 1 isoform X2
- UniProtKB/Swiss-Prot
- A4D118, B2R768, B7Z2I4, B7Z618, B7Z9P2, C9JT37, E9PHB1, F5GXR2, O75849, P50549, Q4KMQ6, Q59GA7, Q6AI30, Q9UQ71, Q9Y636
-
XM_054357479.1 → XP_054213454.1 ETS translocation variant 1 isoform X5
-
XM_054357477.1 → XP_054213452.1 ETS translocation variant 1 isoform X4
-
XM_054357472.1 → XP_054213447.1 ETS translocation variant 1 isoform X1
- UniProtKB/TrEMBL
-
B5MCT2
-
XM_054357476.1 → XP_054213451.1 ETS translocation variant 1 isoform X3