U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    bark protein bark beetle [ Thrips palmi ]

    Gene ID: 117647463, updated on 24-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    bark
    Gene description
    protein bark beetle
    See related
    EnsemblRapid:LOC117647463
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thrips palmi
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Thysanoptera; Terebrantia; Thripoidea; Thripidae; Thrips
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See bark in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    100 current TpBJ-2018v1 (GCF_012932325.1) Unplaced Scaffold NW_023144621.1 (15616115..15644923, complement)

    NW_023144621.1Genomic Context describing neighboring genes Neighboring gene GTP-Rho-binding protein rhophilin Neighboring gene pancreatic lipase-related protein 2-like Neighboring gene uncharacterized LOC117645586 Neighboring gene mitochondrial ribosomal protein L4 Neighboring gene protein tyrosine kinase 2 Fak

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_023144621 Unplaced Scaffold Reference TpBJ-2018v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenomics and the evolution of hemipteroid insects. Johnson KP, et al. Proc Natl Acad Sci U S A, 2018 Dec 11. PMID 30478043, Free PMC Article
    2. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein bark beetle

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Thrips palmi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TpBJ-2018v1 Primary Assembly

    Genomic

    1. NW_023144621.1 Reference TpBJ-2018v1 Primary Assembly

      Range
      15616115..15644923 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034389229.1 → XP_034245120.1  protein bark beetle isoform X3

      UniProtKB/TrEMBL
      A0A6P8Z4T6
      Related
      XP_034245120.1, XM_034389229.1
      Conserved Domains (5) summary
      smart00034
      Location:2458 → 2553
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00202
      Location:74 → 178
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:938 → 1038
      SRCR; Scavenger receptor cysteine-rich domain
      pfam13229
      Location:446 → 548
      Beta_helix; Right handed beta helix region
      cl00049
      Location:355 → 438
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

    2. XM_034389212.1 → XP_034245103.1  protein bark beetle isoform X1

      UniProtKB/TrEMBL
      A0A6P8YY77
      Related
      XP_034245103.1, XM_034389212.1
      Conserved Domains (5) summary
      smart00034
      Location:2463 → 2558
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00202
      Location:74 → 178
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:938 → 1038
      SRCR; Scavenger receptor cysteine-rich domain
      pfam13229
      Location:446 → 548
      Beta_helix; Right handed beta helix region
      cl00049
      Location:355 → 438
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

    3. XM_034389220.1 → XP_034245111.1  protein bark beetle isoform X2

      UniProtKB/TrEMBL
      A0A6P8Z5J7
      Related
      XP_034245111.1, XM_034389220.1
      Conserved Domains (4) summary
      smart00034
      Location:2311 → 2406
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      pfam00530
      Location:786 → 886
      SRCR; Scavenger receptor cysteine-rich domain
      pfam13229
      Location:294 → 396
      Beta_helix; Right handed beta helix region
      cl00049
      Location:203 → 286
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases