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    LOC103852806 disease resistance protein RPP5 [ Brassica rapa (field mustard) ]

    Gene ID: 103852806, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103852806
    Gene description
    disease resistance protein RPP5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103852806 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A02 NC_024796.2 (12461427..12470256, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A2 NC_024796.1 (12879909..12888563, complement)

    Chromosome A02 - NC_024796.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103852804 Neighboring gene nuclear transcription factor Y subunit A-3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC103852807

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPP5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024796.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      12461427..12470256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009129708.3 → XP_009127956.1  disease resistance protein RPP5 isoform X2

      UniProtKB/TrEMBL
      M4CV08
      Conserved Domains (4) summary
      PLN03210
      Location:15 → 822
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00034
      Location:677 → 698
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam01582
      Location:15 → 181
      TIR; TIR domain
      cl21455
      Location:216 → 330
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_009129707.3 → XP_009127955.1  disease resistance protein RPP5 isoform X1

      UniProtKB/TrEMBL
      M4CV08
      Conserved Domains (4) summary
      PLN03210
      Location:15 → 710
      PLN03210; Resistant to P. syringae 6; Provisional
      sd00034
      Location:677 → 698
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam01582
      Location:15 → 181
      TIR; TIR domain
      cl21455
      Location:216 → 330
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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