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    XB5729975 novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domain [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 734077, updated on 18-Sep-2024

    Summary

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    Symbol
    XB5729975provided by Xenbase
    Full Name
    novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domainprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5729976
    See related
    Ensembl:ENSXETG00000041450
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within immune system process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045753.1 → NP_001039218.1  novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domain

      See identical proteins and their annotated locations for NP_001039218.1

      Status: PROVISIONAL

      Source sequence(s)
      CR942581
      UniProtKB/TrEMBL
      F6XXJ9, Q28BX8
      Conserved Domains (4) summary
      cd00021
      Location:139 → 177
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd12891
      Location:366 → 531
      SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin
      cl17238
      Location:12 → 55
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cl23765
      Location:184 → 299
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      14837055..14850199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031892722.1 → XP_031748582.1  novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domain isoform X1

      UniProtKB/TrEMBL
      A0A6I8SXZ6
      Related
      ENSXETP00000100151.2, ENSXETT00000080037.2
      Conserved Domains (4) summary
      smart00502
      Location:184 → 295
      BBC; B-Box C-terminal domain
      cd12891
      Location:353 → 519
      SPRY_PRY_C-I_2; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM14-like, TRIM16-like, TRIM25-like, TRIM47-like, TRIM65 and RNF135, and stonustoxin
      cl00034
      Location:91 → 132
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:9 → 55
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

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