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    LOC101217192 uncharacterized LOC101217192 [ Cucumis sativus (cucumber) ]

    Gene ID: 101217192, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101217192
    Gene description
    uncharacterized LOC101217192
    Locus tag
    Csa_016009
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101217192 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (13478871..13480837)
    101 previous assembly ASM407v2 (GCF_000004075.2) 7 NC_026661.1 (10334964..10336921)

    Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene probable choline kinase 1 Neighboring gene uncharacterized LOC116405256 Neighboring gene protein GIGANTEA Neighboring gene uncharacterized LOC116405080 Neighboring gene 40S ribosomal protein S18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CAAX-box protein processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC101217192

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      13478871..13480837
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011660803.2 → XP_011659105.1  uncharacterized protein LOC101217192 isoform X2

      Conserved Domains (2) summary
      COG1266
      Location:101 → 243
      YdiL; Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones]
      pfam02517
      Location:156 → 239
      Abi; CAAX protease self-immunity

    2. XM_004139641.3 → XP_004139689.1  uncharacterized protein LOC101217192 isoform X1

      See identical proteins and their annotated locations for XP_004139689.1

      UniProtKB/TrEMBL
      A0A0A0K4Q9
      Conserved Domains (2) summary
      COG1266
      Location:154 → 296
      YdiL; Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones]
      pfam02517
      Location:209 → 292
      Abi; CAAX protease self-immunity

    3. XM_031888436.1 → XP_031744296.1  uncharacterized protein LOC101217192 isoform X3

      Conserved Domains (1) summary
      pfam02517
      Location:129 → 212
      Abi; CAAX protease self-immunity
    Nucleotide Protein
    Heading Accession and Version

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