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    LOC101213708 pseudo histidine-containing phosphotransfer protein 6 [ Cucumis sativus (cucumber) ]

    Gene ID: 101213708, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101213708
    Gene description
    pseudo histidine-containing phosphotransfer protein 6
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101213708 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (912307..914814, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (891199..893716, complement)

    Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 14 Neighboring gene protein LURP-one-related 5 Neighboring gene palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic Neighboring gene palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histidine phosphotransfer kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein histidine kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pseudo histidine-containing phosphotransfer protein 6
    Names
    histidine-containing phosphotransfer protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      912307..914814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004152148.3 → XP_004152196.1  pseudo histidine-containing phosphotransfer protein 6

      See identical proteins and their annotated locations for XP_004152196.1

      Conserved Domains (1) summary
      pfam01627
      Location:47 → 127
      Hpt; Hpt domain
    Nucleotide Protein
    Heading Accession and Version

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