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    LOC101220192 protein ACCELERATED CELL DEATH 6 [ Cucumis sativus (cucumber) ]

    Gene ID: 101220192, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC101220192
    Gene description
    protein ACCELERATED CELL DEATH 6
    Locus tag
    Csa_019478
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101220192 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (2022197..2025961, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (1883645..1887338, complement)

    Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene protein ACCELERATED CELL DEATH 6 Neighboring gene uncharacterized LOC116402257 Neighboring gene flowering locus K homology domain Neighboring gene uncharacterized protein At2g34160

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein phosphatase 1 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ACCELERATED CELL DEATH 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      2022197..2025961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004139337.3 → XP_004139385.1  protein ACCELERATED CELL DEATH 6

      See identical proteins and their annotated locations for XP_004139385.1

      UniProtKB/TrEMBL
      A0A0A0LFG3
      Conserved Domains (4) summary
      COG0666
      Location:257 → 432
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:283 → 315
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:55 → 156
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:508 → 611
      PGG; Domain of unknown function
    Nucleotide Protein
    Heading Accession and Version

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