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    LOC101217374 scarecrow-like protein 34 [ Cucumis sativus (cucumber) ]

    Gene ID: 101217374, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101217374
    Gene description
    scarecrow-like protein 34
    Locus tag
    Csa_020026
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101217374 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (21584402..21586984)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (18204989..18207476)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene oxysterol-binding protein-related protein 3C Neighboring gene telomere repeat-binding protein 5 Neighboring gene uncharacterized protein C24B11.05 Neighboring gene uncharacterized LOC116401814

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scarecrow-like protein 34

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      21584402..21586984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004145240.3 → XP_004145288.1  scarecrow-like protein 34

      See identical proteins and their annotated locations for XP_004145288.1

      UniProtKB/TrEMBL
      A0A0A0LY26
      Conserved Domains (1) summary
      pfam03514
      Location:332 → 695
      GRAS; GRAS domain family
    Nucleotide Protein
    Heading Accession and Version

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