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    LOC116210517 sucrose synthase 3 [ Punica granatum (pomegranate) ]

    Gene ID: 116210517, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC116210517
    Gene description
    sucrose synthase 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Punica granatum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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    Genomic context

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    See LOC116210517 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    100 current ASM765513v2 (GCF_007655135.1) 6 NC_045132.1 (17237912..17245337, complement)

    Chromosome 6 - NC_045132.1Genomic Context describing neighboring genes Neighboring gene pectinesterase-like Neighboring gene endoglucanase 17 Neighboring gene exopolygalacturonase-like Neighboring gene putative GTP diphosphokinase RSH1, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045132.1 Chromosome 6 Reference ASM765513v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Single-nucleotide polymorphism markers from de-novo assembly of the pomegranate transcriptome reveal germplasm genetic diversity. Ophir R, et al. PLoS One, 2014. PMID 24558460, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sucrose synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sucrose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: sucrose synthase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Punica granatum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM765513v2 Primary Assembly

    Genomic

    1. NC_045132.1 Reference ASM765513v2 Primary Assembly

      Range
      17237912..17245337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031544401.1 → XP_031400261.1  LOW QUALITY PROTEIN: sucrose synthase 3

      UniProtKB/TrEMBL
      A0A218WZ93, A0A6P8E4A8
      Conserved Domains (1) summary
      PLN00142
      Location:1 → 811
      PLN00142; sucrose synthase
    Nucleotide Protein
    Heading Accession and Version

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