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    LOC583658 zinc finger protein ubi-d4 B [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 583658, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC583658
    Gene description
    zinc finger protein ubi-d4 B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC583658 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145611.1 (24962117..24969761)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577559.1 (401433..411712)

    NW_022145611.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase pellino homolog 1 Neighboring gene uncharacterized LOC577786 Neighboring gene polyribonucleotide nucleotidyltransferase 1 Neighboring gene uncharacterized LOC105445803

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein ubi-d4 B; zinc finger protein ubi-d4
    Names
    zinc finger protein DPF3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145611.1 Reference Spur_5.0 Primary Assembly

      Range
      24962117..24969761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_783560.5 → XP_788653.3  zinc finger protein ubi-d4 isoform X1

      UniProtKB/TrEMBL
      A0A7M7RFG2
      Conserved Domains (4) summary
      COG5189
      Location:212 → 245
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:371 → 416
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15619
      Location:314 → 369
      PHD1_d4; PHD finger 1 found in d4 gene family proteins
      pfam14051
      Location:20 → 90
      Requiem_N; N-terminal domain of DPF2/REQ

    2. XM_011681809.2 → XP_011680111.1  zinc finger protein ubi-d4 isoform X2

      UniProtKB/TrEMBL
      A0A7M7HN81
      Conserved Domains (4) summary
      COG5189
      Location:212 → 245
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:370 → 415
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15619
      Location:313 → 368
      PHD1_d4; PHD finger 1 found in d4 gene family proteins
      pfam14051
      Location:20 → 90
      Requiem_N; N-terminal domain of DPF2/REQ

    3. XM_011681811.2 → XP_011680113.1  zinc finger protein ubi-d4 B isoform X4

      UniProtKB/TrEMBL
      A0A7M7HQR6
      Conserved Domains (4) summary
      COG5189
      Location:212 → 245
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:345 → 390
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15619
      Location:288 → 343
      PHD1_d4; PHD finger 1 found in d4 gene family proteins
      pfam14051
      Location:20 → 90
      Requiem_N; N-terminal domain of DPF2/REQ

    4. XM_030998584.1 → XP_030854444.1  zinc finger protein ubi-d4 B isoform X5

      UniProtKB/TrEMBL
      A0A7M7PQB9
      Conserved Domains (4) summary
      COG5189
      Location:212 → 245
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:344 → 389
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15619
      Location:287 → 342
      PHD1_d4; PHD finger 1 found in d4 gene family proteins
      pfam14051
      Location:20 → 90
      Requiem_N; N-terminal domain of DPF2/REQ

    5. XM_011681810.2 → XP_011680112.1  zinc finger protein ubi-d4 isoform X3

      UniProtKB/TrEMBL
      A0A7M7LWI4
      Conserved Domains (3) summary
      cd15530
      Location:355 → 400
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15619
      Location:298 → 353
      PHD1_d4; PHD finger 1 found in d4 gene family proteins
      pfam14051
      Location:20 → 90
      Requiem_N; N-terminal domain of DPF2/REQ

    6. XM_011681813.2 → XP_011680115.1  zinc finger protein ubi-d4 isoform X6

      UniProtKB/TrEMBL
      A0A7M7LTU0
      Conserved Domains (3) summary
      cd15530
      Location:329 → 374
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15619
      Location:272 → 327
      PHD1_d4; PHD finger 1 found in d4 gene family proteins
      pfam14051
      Location:20 → 90
      Requiem_N; N-terminal domain of DPF2/REQ
    Nucleotide Protein
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