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    LARP4B La ribonucleoprotein 4B [ Strigops habroptila (Kakapo) ]

    Gene ID: 115612894, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LARP4B
    Gene description
    La ribonucleoprotein 4B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
    Orthologs
    human mouse all
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    Genomic context

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    See LARP4B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) 1 NC_044277.2 (108245963..108301990, complement)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 1 NC_044277.1 (124717158..124773185, complement)

    Chromosome 1 - NC_044277.2Genomic Context describing neighboring genes Neighboring gene zinc finger MYND-type containing 11 Neighboring gene disco interacting protein 2 homolog C Neighboring gene uncharacterized LOC115617906 Neighboring gene GTP binding protein 4 Neighboring gene isopentenyl-diphosphate delta isomerase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    la-related protein 4B
    Names
    La ribonucleoprotein domain family member 4B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NC_044277.2 Reference bStrHab1.2.pri

      Range
      108245963..108301990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030497853.1 → XP_030353713.1  la-related protein 4B isoform X8

      Conserved Domains (2) summary
      cd08031
      Location:145 → 219
      LARP_4_5_like; La RNA-binding domain of proteins similar to La-related proteins 4 and 5
      cd12706
      Location:224 → 300
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    2. XM_030497811.1 → XP_030353671.1  la-related protein 4B isoform X7

      UniProtKB/TrEMBL
      A0A672UMN1
      Conserved Domains (2) summary
      cd08031
      Location:145 → 219
      LARP_4_5_like; La RNA-binding domain of proteins similar to La-related proteins 4 and 5
      cd12706
      Location:224 → 300
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    3. XM_030497834.1 → XP_030353694.1  la-related protein 4B isoform X7

      UniProtKB/TrEMBL
      A0A672UMN1
      Conserved Domains (2) summary
      cd08031
      Location:145 → 219
      LARP_4_5_like; La RNA-binding domain of proteins similar to La-related proteins 4 and 5
      cd12706
      Location:224 → 300
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    4. XM_030497829.1 → XP_030353689.1  la-related protein 4B isoform X7

      UniProtKB/TrEMBL
      A0A672UMN1
      Conserved Domains (2) summary
      cd08031
      Location:145 → 219
      LARP_4_5_like; La RNA-binding domain of proteins similar to La-related proteins 4 and 5
      cd12706
      Location:224 → 300
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    5. XM_030497844.1 → XP_030353704.1  la-related protein 4B isoform X7

      UniProtKB/TrEMBL
      A0A672UMN1
      Conserved Domains (2) summary
      cd08031
      Location:145 → 219
      LARP_4_5_like; La RNA-binding domain of proteins similar to La-related proteins 4 and 5
      cd12706
      Location:224 → 300
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    6. XM_030497821.1 → XP_030353681.1  la-related protein 4B isoform X7

      UniProtKB/TrEMBL
      A0A672UMN1
      Conserved Domains (2) summary
      cd08031
      Location:145 → 219
      LARP_4_5_like; La RNA-binding domain of proteins similar to La-related proteins 4 and 5
      cd12706
      Location:224 → 300
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    7. XM_030497768.1 → XP_030353628.1  la-related protein 4B isoform X2

      Conserved Domains (3) summary
      cd08036
      Location:1260 → 1334
      LARP_5; La RNA-binding domain of La-related protein 5
      PHA03247
      Location:1493 → 1802
      PHA03247; large tegument protein UL36; Provisional
      cd12706
      Location:1339 → 1415
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    8. XM_030497784.1 → XP_030353644.1  la-related protein 4B isoform X4

      Conserved Domains (2) summary
      cd08036
      Location:1260 → 1334
      LARP_5; La RNA-binding domain of La-related protein 5
      cd12706
      Location:1339 → 1415
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    9. XM_030497776.1 → XP_030353636.1  la-related protein 4B isoform X3

      Conserved Domains (2) summary
      cd08036
      Location:1260 → 1334
      LARP_5; La RNA-binding domain of La-related protein 5
      cd12706
      Location:1339 → 1415
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    10. XM_030497759.1 → XP_030353619.1  la-related protein 4B isoform X1

      Conserved Domains (2) summary
      cd08036
      Location:1260 → 1334
      LARP_5; La RNA-binding domain of La-related protein 5
      cd12706
      Location:1339 → 1415
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    11. XM_030497801.1 → XP_030353661.1  la-related protein 4B isoform X6

      Conserved Domains (2) summary
      cd08036
      Location:664 → 738
      LARP_5; La RNA-binding domain of La-related protein 5
      cd12706
      Location:743 → 819
      RRM_LARP5; RNA recognition motif in vertebrate La-related protein 5 (LARP5 or LARP4B)

    12. XM_030497792.1 → XP_030353652.1  la-related protein 4B isoform X5

    Nucleotide Protein
    Heading Accession and Version

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