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    LOC115602338 basic proline-rich protein-like [ Strigops habroptila (Kakapo) ]

    Gene ID: 115602338, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC115602338
    Gene description
    basic proline-rich protein-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strigops habroptila
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Strigops
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    Genomic context

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    See LOC115602338 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current bStrHab1.2.pri (GCF_004027225.2) 18 NC_044294.2 (2616536..2632964)
    100 previous assembly bStrHab1_v1.p (GCF_004027225.1) 14 Unlocalized Scaffold NW_022045574.1 (2616536..2632964)

    Chromosome 18 - NC_044294.2Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 49 Neighboring gene translocase of outer mitochondrial membrane 6 Neighboring gene prickle planar cell polarity protein 4 Neighboring gene fibroblast growth factor receptor substrate 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of gene expression, epigenetic IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic proline-rich protein-like; basic salivary proline-rich protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strigops habroptila Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bStrHab1.2.pri

    Genomic

    1. NC_044294.2 Reference bStrHab1.2.pri

      Range
      2616536..2632964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030473372.1 → XP_030329232.1  basic proline-rich protein-like isoform X1

      Conserved Domains (2) summary
      PRK13700
      Location:311 → 457
      PRK13700; conjugal transfer protein TraD; Provisional
      PRK10263
      Location:214 → 391
      PRK10263; DNA translocase FtsK; Provisional

    2. XM_030473370.1 → XP_030329230.1  basic proline-rich protein-like isoform X1

      Conserved Domains (2) summary
      PRK13700
      Location:311 → 457
      PRK13700; conjugal transfer protein TraD; Provisional
      PRK10263
      Location:214 → 391
      PRK10263; DNA translocase FtsK; Provisional

    3. XM_030473373.2 → XP_030329233.1  basic salivary proline-rich protein 1-like isoform X2

      Conserved Domains (2) summary
      PRK13700
      Location:279 → 425
      PRK13700; conjugal transfer protein TraD; Provisional
      PRK10263
      Location:182 → 359
      PRK10263; DNA translocase FtsK; Provisional

    4. XM_030473374.2 → XP_030329234.1  basic salivary proline-rich protein 1-like isoform X3

      Conserved Domains (2) summary
      PRK13700
      Location:258 → 404
      PRK13700; conjugal transfer protein TraD; Provisional
      PRK10263
      Location:157 → 338
      PRK10263; DNA translocase FtsK; Provisional

    5. XM_030473375.2 → XP_030329235.1  basic proline-rich protein-like isoform X4

      Conserved Domains (2) summary
      PRK13700
      Location:257 → 403
      PRK13700; conjugal transfer protein TraD; Provisional
      PRK10263
      Location:160 → 337
      PRK10263; DNA translocase FtsK; Provisional
    Nucleotide Protein
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