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    LIMK1 LIM domain kinase 1 [ Calypte anna (Anna's hummingbird) ]

    Gene ID: 103535844, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LIMK1
    Gene description
    LIM domain kinase 1
    Locus tag
    N300_07233
    See related
    EnsemblRapid:ENSCAAG00010003531
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Calypte anna
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
    Also known as
    Elastin
    Orthologs
    human mouse all
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    Genomic context

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    See LIMK1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current bCalAnn1_v1.p (GCF_003957555.1) 19 NC_044264.1 (2510556..2518407, complement)
    100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007621750.1 (2204701..2245506, complement)

    Chromosome 19 - NC_044264.1Genomic Context describing neighboring genes Neighboring gene SBDS ribosome maturation factor Neighboring gene septin 4 Neighboring gene elastin Neighboring gene methyltransferase like 27

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of stress fiber assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM domain kinase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bCalAnn1_v1.p

    Genomic

    1. NC_044264.1 Reference bCalAnn1_v1.p

      Range
      2510556..2518407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030462730.1 → XP_030318590.1  LIM domain kinase 1 isoform X1

      Related
      ENSCAAP00010004956.1, ENSCAAT00010005237.1
      Conserved Domains (4) summary
      cd09462
      Location:5 → 78
      LIM1_LIMK1; The first LIM domain of LIMK1 (LIM domain Kinase 1)
      cd14221
      Location:347 → 613
      STKc_LIMK1; Catalytic domain of the Serine/Threonine Kinase, LIM domain kinase 1
      cl02475
      Location:85 → 139
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
      pfam00595
      Location:166 → 251
      PDZ; PDZ domain (Also known as DHR or GLGF)

    2. XM_030462731.1 → XP_030318591.1  LIM domain kinase 1 isoform X2

      Conserved Domains (3) summary
      cd14221
      Location:312 → 578
      STKc_LIMK1; Catalytic domain of the Serine/Threonine Kinase, LIM domain kinase 1
      cl02475
      Location:50 → 104
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
      pfam00595
      Location:131 → 216
      PDZ; PDZ domain (Also known as DHR or GLGF)
    Nucleotide Protein
    Heading Accession and Version

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