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    SMPD4 sphingomyelin phosphodiesterase 4 [ Microcaecilia unicolor ]

    Gene ID: 115479729, updated on 17-Mar-2024

    Summary

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    Gene symbol
    SMPD4
    Gene description
    sphingomyelin phosphodiesterase 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Microcaecilia unicolor
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
    Orthologs
    human mouse all
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    Genomic context

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    See SMPD4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    100 current aMicUni1.1 (GCF_901765095.1) 11 NC_044041.1 (60451845..60551513, complement)

    Chromosome 11 - NC_044041.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 15 Neighboring gene uncharacterized LOC115480382 Neighboring gene coiled-coil domain-containing protein 74A-like Neighboring gene gamma-glutamyltransferase 5 Neighboring gene glutathione hydrolase 5 proenzyme-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044041.1 Chromosome 11 Reference aMicUni1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sphingomyelin phosphodiesterase D activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingomyelin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingomyelin phosphodiesterase 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aMicUni1.1 Primary Assembly

    Genomic

    1. NC_044041.1 Reference aMicUni1.1 Primary Assembly

      Range
      60451845..60551513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030217877.1 → XP_030073737.1  sphingomyelin phosphodiesterase 4 isoform X1

      UniProtKB/TrEMBL
      A0A6P7Z342
      Conserved Domains (1) summary
      pfam14724
      Location:77 → 836
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    2. XM_030217878.1 → XP_030073738.1  sphingomyelin phosphodiesterase 4 isoform X2

      UniProtKB/TrEMBL
      A0A6P7Z8A1
      Conserved Domains (1) summary
      pfam14724
      Location:77 → 806
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    3. XM_030217882.1 → XP_030073742.1  sphingomyelin phosphodiesterase 4 isoform X3

      UniProtKB/TrEMBL
      A0A6P7ZDT1
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 773
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    4. XM_030217883.1 → XP_030073743.1  sphingomyelin phosphodiesterase 4 isoform X3

      UniProtKB/TrEMBL
      A0A6P7ZDT1
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 773
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    5. XM_030217879.1 → XP_030073739.1  sphingomyelin phosphodiesterase 4 isoform X3

      UniProtKB/TrEMBL
      A0A6P7ZDT1
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 773
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    6. XM_030217884.1 → XP_030073744.1  sphingomyelin phosphodiesterase 4 isoform X3

      UniProtKB/TrEMBL
      A0A6P7ZDT1
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 773
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    7. XM_030217881.1 → XP_030073741.1  sphingomyelin phosphodiesterase 4 isoform X3

      UniProtKB/TrEMBL
      A0A6P7ZDT1
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 773
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    8. XM_030217880.1 → XP_030073740.1  sphingomyelin phosphodiesterase 4 isoform X3

      UniProtKB/TrEMBL
      A0A6P7ZDT1
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 773
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

    9. XM_030217886.1 → XP_030073746.1  sphingomyelin phosphodiesterase 4 isoform X4

      UniProtKB/TrEMBL
      A0A6P7ZB16
      Conserved Domains (1) summary
      pfam14724
      Location:8 → 743
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
    Nucleotide Protein
    Heading Accession and Version

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