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    LOC115205393 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like [ Salmo trutta (river trout) ]

    Gene ID: 115205393, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC115205393
    Gene description
    bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like
    See related
    Ensembl:ENSSTUG00000006043
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Salmo trutta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See LOC115205393 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current fSalTru1.1 (GCF_901001165.1) 13 NC_042969.1 (19164709..19254040, complement)

    Chromosome 13 - NC_042969.1Genomic Context describing neighboring genes Neighboring gene SLC35A4 upstream open reading frame protein-like Neighboring gene HMG-box containing 3 Neighboring gene HLA class II histocompatibility antigen gamma chain-like Neighboring gene pre-mRNA-splicing factor RBM22-like Neighboring gene myozenin-2-like Neighboring gene uncharacterized LOC115205399

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_042969.1 Chromosome 13 Reference fSalTru1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSalTru1.1 Primary Assembly

    Genomic

    1. NC_042969.1 Reference fSalTru1.1 Primary Assembly

      Range
      19164709..19254040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029771340.1 → XP_029627200.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X1

      UniProtKB/TrEMBL
      A0A673WMB4, A0A673WX04

    2. XM_029771339.1 → XP_029627199.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X1

      UniProtKB/TrEMBL
      A0A673WMB4, A0A673WX04
      Related
      ENSSTUP00000013130.1, ENSSTUT00000013885.1

    3. XM_029771341.1 → XP_029627201.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X1

      UniProtKB/TrEMBL
      A0A673WMB4, A0A673WX04
      Related
      ENSSTUP00000013194.1, ENSSTUT00000013948.1

    4. XM_029771342.1 → XP_029627202.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X2

      UniProtKB/TrEMBL
      A0A673WYM0
      Conserved Domains (2) summary
      pfam00685
      Location:514 → 764
      Sulfotransfer_1; Sulfotransferase domain
      pfam12062
      Location:84 → 424
      HSNSD; heparan sulfate-N-deacetylase
    Nucleotide Protein
    Heading Accession and Version

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