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    RBBP8NL RBBP8 N-terminal like [ Homo sapiens (human) ]

    Gene ID: 140893, updated on 2-Nov-2024

    Summary

    Official Symbol
    RBBP8NLprovided by HGNC
    Official Full Name
    RBBP8 N-terminal likeprovided by HGNC
    Primary source
    HGNC:HGNC:16144
    See related
    Ensembl:ENSG00000130701 AllianceGenome:HGNC:16144
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C20orf151
    Summary
    Located in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in small intestine (RPKM 2.1), duodenum (RPKM 2.0) and 16 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See RBBP8NL in Genome Data Viewer
    Location:
    20q13.33
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62410237..62427539, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64206781..64224245, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (60985293..61002595, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:60961625-60962316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60962317-60963008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60967444-60967944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60967945-60968445 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:60968662-60969186 Neighboring gene Cdk5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21 Neighboring gene uncharacterized LOC105372709 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13112 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:60998065-60998856 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61001435-61002194 Neighboring gene uncharacterized LOC105372710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61012716-61013216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61016724-61017224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61017225-61017725 Neighboring gene Sharpr-MPRA regulatory region 3586 Neighboring gene GATA binding protein 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61048659-61049319

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    RBBP8 N-terminal-like protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_080833.3NP_543023.2  RBBP8 N-terminal-like protein

      See identical proteins and their annotated locations for NP_543023.2

      Status: VALIDATED

      Source sequence(s)
      AK074919, AL121832, BC033142, DA871775
      Consensus CDS
      CCDS13498.1
      UniProtKB/Swiss-Prot
      B2RP98, Q8N4Z9, Q8NC74, Q9BR75, Q9H0Y9
      UniProtKB/TrEMBL
      A8K2N4
      Related
      ENSP00000252998.1, ENST00000252998.2
      Conserved Domains (1) summary
      pfam10482
      Location:4122
      CtIP_N; Tumour-suppressor protein CtIP N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      62410237..62427539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      64206781..64224245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)