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    tmtc4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Xiphophorus couchianus (Monterrey platyfish) ]

    Gene ID: 114147748, updated on 15-Mar-2024

    Summary

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    Gene symbol
    tmtc4
    Gene description
    transmembrane O-mannosyltransferase targeting cadherins 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus couchianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Orthologs
    human zebrafish all
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    Genomic context

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    See tmtc4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current X_couchianus-1.0 (GCF_001444195.1) 7 NC_040234.1 (9606193..9623833)

    Chromosome 7 - NC_040234.1Genomic Context describing neighboring genes Neighboring gene integrin, beta-like 1 Neighboring gene sodium leak channel, non-selective Neighboring gene zic family member 2 (odd-paired homolog, Drosophila), a Neighboring gene zic family member 5 (odd-paired homolog, Drosophila)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040234.1 Chromosome 7 Reference X_couchianus-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein O-linked mannosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein O-mannosyl-transferase TMTC4
    Names
    transmembrane and tetratricopeptide repeat containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus couchianus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_couchianus-1.0 Primary Assembly

    Genomic

    1. NC_040234.1 Reference X_couchianus-1.0 Primary Assembly

      Range
      9606193..9623833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028022341.1 → XP_027878142.1  protein O-mannosyl-transferase TMTC4 isoform X2

      Conserved Domains (3) summary
      TIGR02521
      Location:473 → 606
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      sd00006
      Location:482 → 510
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:291 → 353
      DUF1736; Domain of unknown function (DUF1736)

    2. XM_028022340.1 → XP_027878141.1  protein O-mannosyl-transferase TMTC4 isoform X1

      Conserved Domains (3) summary
      TIGR02917
      Location:468 → 734
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:482 → 510
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:291 → 353
      DUF1736; Domain of unknown function (DUF1736)
    Nucleotide Protein
    Heading Accession and Version

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