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    Gm3317 predicted gene 3317 [ Mus musculus (house mouse) ]

    Gene ID: 666329, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm3317provided by MGI
    Official Full Name
    predicted gene 3317provided by MGI
    Primary source
    MGI:MGI:3781495
    See related
    Ensembl:ENSMUSG00000095912 AllianceGenome:MGI:3781495
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    100041401
    Expression
    Biased expression in CNS E18 (RPKM 8.1), CNS E14 (RPKM 4.8) and 13 other tissues See more
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    Genomic context

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    See Gm3317 in Genome Data Viewer
    Location:
    14 A2; 14 2.8 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (17299481..17321955, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (5147818..5170292)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26552 Neighboring gene ribosomal protein L3 pseudogene Neighboring gene predicted gene 8271 Neighboring gene STARR-seq mESC enhancer starr_35819 Neighboring gene predicted gene 8279 Neighboring gene STARR-seq mESC enhancer starr_35820 Neighboring gene predicted pseudogene 8281

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    General protein information

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    Preferred Names
    alpha21-takusan
    Names
    alpha22-takusan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001242941.2 → NP_001229870.2  alpha21-takusan

      See identical proteins and their annotated locations for NP_001229870.2

      Status: VALIDATED

      Source sequence(s)
      AC164114
      UniProtKB/TrEMBL
      A0AA74KT48, M0QW81
      Conserved Domains (1) summary
      pfam04822
      Location:50 → 125
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      17299481..17321955 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036158803.1 → XP_036014696.1  alpha21-takusan isoform X1

      Conserved Domains (1) summary
      pfam04822
      Location:341 → 421
      Takusan

    2. XM_030247946.1 → XP_030103806.1  alpha21-takusan isoform X2

      Conserved Domains (1) summary
      pfam04822
      Location:254 → 334
      Takusan

    3. XM_036158808.1 → XP_036014701.1  alpha21-takusan isoform X12

      UniProtKB/TrEMBL
      A6NAS3, A6NAT8
      Related
      ENSMUSP00000137175.2, ENSMUST00000179659.2
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 73
      Takusan

    4. XM_036158807.1 → XP_036014700.1  alpha21-takusan isoform X12

      UniProtKB/TrEMBL
      A6NAS3, A6NAT8
      Conserved Domains (1) summary
      pfam04822
      Location:1 → 73
      Takusan

    5. XM_036158806.1 → XP_036014699.1  alpha21-takusan isoform X11

      UniProtKB/TrEMBL
      A6NAS3
      Conserved Domains (1) summary
      pfam04822
      Location:14 → 94
      Takusan

    6. XM_030247952.2 → XP_030103812.1  alpha21-takusan isoform X7

    7. XM_030247953.2 → XP_030103813.1  alpha21-takusan isoform X8

    8. XM_030247950.2 → XP_030103810.1  alpha21-takusan isoform X5

    9. XM_030247955.2 → XP_030103815.1  alpha21-takusan isoform X10

    10. XM_030247954.2 → XP_030103814.1  alpha21-takusan isoform X9

    11. XM_030247948.2 → XP_030103808.1  alpha21-takusan isoform X3

    12. XM_030247949.2 → XP_030103809.1  alpha21-takusan isoform X4

    13. XM_036158805.1 → XP_036014698.1  alpha21-takusan isoform X6

    RNA

    1. XR_003950896.2 RNA Sequence

    2. XR_003950897.2 RNA Sequence

    3. XR_003950898.2 RNA Sequence

    4. XR_003950895.2 RNA Sequence

    5. XR_003950894.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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