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    hdac9.S histone deacetylase 9 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 378615, updated on 17-Aug-2024

    Summary

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    Official Symbol
    hdac9.S
    Official Full Name
    histone deacetylase 9 S homeolog
    Primary source
    Xenbase:XB-GENE-865808
    Locus tag
    XELAEV_18033026mg
    See related
    EnsemblRapid:ENSXLAG00005026142
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    MITR; hdrp; hdac9; hdac9-A
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    Genomic context

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    See hdac9.S in Genome Data Viewer
    Location:
    chromosome: 6S
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (30524447..30798301)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (30157897..30270926)

    Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene aryl hydrocarbon receptor S homeolog Neighboring gene sorting nexin 13 S homeolog Neighboring gene twist family bHLH transcription factor 1 S homeolog Neighboring gene Fer3-like bHLH transcription factor S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MEF-2 function is modified by a novel co-repressor, MITR. Sparrow DB, et al. EMBO J, 1999 Sep 15. PMID 10487760, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables histone deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    histone deacetylase 9
    Names
    MEF2-interacting transcription repressor MITR
    histone deacetylase 9, MITR protein
    histone deacetylase-related protein
    NP_001079307.1
    XP_018124043.1
    XP_041423000.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085838.1 → NP_001079307.1  histone deacetylase 9

      See identical proteins and their annotated locations for NP_001079307.1

      Status: PROVISIONAL

      Source sequence(s)
      Z97214
      UniProtKB/TrEMBL
      B7ZSF1
      Related
      ENSXLAP00005077976.1, ENSXLAT00005079567.1
      Conserved Domains (1) summary
      cd10163
      Location:34 → 125
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      30524447..30798301
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041567066.1 → XP_041423000.1  histone deacetylase 9 isoform X2

      UniProtKB/Swiss-Prot
      Q9YGY4
      UniProtKB/TrEMBL
      A0A8J1L0B9, A0A974CIS8
      Conserved Domains (1) summary
      cd10163
      Location:63 → 154
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

    2. XM_018268554.2 → XP_018124043.1  histone deacetylase 9 isoform X1

      UniProtKB/Swiss-Prot
      Q9YGY4
      UniProtKB/TrEMBL
      A0A8J0VKW5, A0A974CIS8
      Related
      ENSXLAP00005077725.1, ENSXLAT00005079316.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9YGY4.2 GenPept UniProtKB/Swiss-Prot:Q9YGY4

    Gene LinkOut

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