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    GOLGA6L3P golgin A6 family like 3, pseudogene [ Homo sapiens (human) ]

    Gene ID: 100133220, updated on 17-Sep-2024

    Summary

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    Official Symbol
    GOLGA6L3Pprovided by HGNC
    Official Full Name
    golgin A6 family like 3, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:37441
    See related
    Ensembl:ENSG00000188388 AllianceGenome:HGNC:37441
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GOLGA6L3
    Expression
    Broad expression in testis (RPKM 13.5), ovary (RPKM 6.3) and 24 other tissues See more
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    Genomic context

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    See GOLGA6L3P in Genome Data Viewer
    Location:
    15q25.3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (85240351..85247187)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (82992547..82999384)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (85783582..85790418)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A2 pseudogene Neighboring gene golgin A2 pseudogene Neighboring gene RNA, 7SL, cytoplasmic 428, pseudogene Neighboring gene uncharacterized LOC105370948 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:85773184-85773406 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10002 Neighboring gene dynamin 1 pseudogene 45 Neighboring gene ADAMTS7 pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:85802852-85803352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:85803353-85803853 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:85805463-85806020

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Analysis of the DNA sequence and duplication history of human chromosome 15. Zody MC, et al. Nature, 2006 Mar 30. PMID 16572171
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • golgi autoantigen, golgin subfamily a, 6-like 3
    • golgin A6 family like 3

    Clone Names

    • FLJ61448

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_171665.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC044860
      Related
      ENST00000507199.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      85240351..85247187
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791797.1 Reference GRCh38.p14 PATCHES

      Range
      1001753..1008752 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      82992547..82999384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001310153.2: Suppressed sequence

      Description
      NM_001310153.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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