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    LOC102456831 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

    Gene ID: 102456831, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC102456831
    Gene description
    bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
    See related
    Ensembl:ENSPSIG00000010254
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pelodiscus sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
    Also known as
    NDST4
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    Genomic context

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    See LOC102456831 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005852158.1 (1138439..1318865)

    NW_005852158.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112543652 Neighboring gene CAP-Gly domain-containing linker protein 1-like Neighboring gene 2-hydroxyacylsphingosine 1-beta-galactosyltransferase-like Neighboring gene 2-hydroxyacylsphingosine 1-beta-galactosyltransferase pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005852158 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
    Names
    N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PelSin_1.0 Primary Assembly

    Genomic

    1. NW_005852158.1 Reference PelSin_1.0 Primary Assembly

      Range
      1138439..1318865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006112755.3 → XP_006112817.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

      See identical proteins and their annotated locations for XP_006112817.1

      UniProtKB/TrEMBL
      K7FTU5
      Conserved Domains (2) summary
      pfam00685
      Location:595 → 846
      Sulfotransfer_1; Sulfotransferase domain
      pfam12062
      Location:20 → 506
      HSNSD; heparan sulfate-N-deacetylase

    2. XM_006112754.3 → XP_006112816.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

      See identical proteins and their annotated locations for XP_006112816.1

      UniProtKB/TrEMBL
      K7FTU5
      Related
      ENSPSIP00000011455.1, ENSPSIT00000011512.1
      Conserved Domains (2) summary
      pfam00685
      Location:595 → 846
      Sulfotransfer_1; Sulfotransferase domain
      pfam12062
      Location:20 → 506
      HSNSD; heparan sulfate-N-deacetylase

    3. XM_014580495.2 → XP_014435981.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

      Conserved Domains (2) summary
      pfam00685
      Location:534 → 785
      Sulfotransfer_1; Sulfotransferase domain
      pfam12062
      Location:20 → 506
      HSNSD; heparan sulfate-N-deacetylase
    Nucleotide Protein
    Heading Accession and Version

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